Homology Contig-U05489-1 vs DNA
Query= Contig-U05489-1 (Contig-U05489-1Q) /CSM_Contig/Contig-U05489-1Q.Seq.d
(860 letters)
Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(C90588) Dictyostelium discoideum slug cDNA, clone SSI814. 664 0.0 2
(AU073944) Dictyostelium discoideum slug cDNA, clone SSI814. 365 2e-96 1
(AR545586) Sequence 717 from patent US 6747137. 52 4e-07 2
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ... 52 0.037 1
(FC738639) CBBH646.fwd CBBH Lottia gigantea 26h,37h,61h Larv... 44 0.13 2
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ... 50 0.15 1
(AC171461) Xenopus (Silurana) tropicalis clone CH216-8H16, W... 48 0.58 1
(AC171459) Xenopus (Silurana) tropicalis clone CH216-7L20, W... 48 0.58 1
(EJ348893) 1092963568340 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.58 1
(L42537) Clostridium botulinum ha70, ha17, ha34, orfX, ntnhA... 44 0.92 3
(EJ310229) 1095390195344 Global-Ocean-Sampling_GS-27-01-01-1... 44 1.7 2
(AP007826) Lotus japonicus genomic DNA, chromosome 5, clone:... 46 1.7 3
(AF488748) Clostridium botulinum NTNH gene, complete cds. 44 1.8 2
(EU448291) Homo sapiens cytochrome b5 reductase 4 (CYB5R4) g... 34 1.9 4
(X92973) C.botulinum A ntnh and bont genes. 44 1.9 2
(AP006716) Staphylococcus haemolyticus JCSC1435 DNA, complet... 38 2.1 17
(D67030) Clostridium botulinum genes for ORF22-a and type A ... 44 2.2 2
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 46 2.3 1
(CU137667) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.3 1
(AC219283) Bos taurus clone CH240-335H1, WORKING DRAFT SEQUE... 46 2.3 1
(EJ052908) 1095456008736 Global-Ocean-Sampling_GS-26-01-01-1... 46 2.3 1
(AL183794) Tetraodon nigroviridis genome survey sequence PUC... 46 2.3 1
(AV140479) Mus musculus 10-11 day embryo cDNA, partial seque... 46 2.3 1
(BW968934) Sus scrofa mRNA, clone:PBL010008B02, 5' end, expr... 46 2.3 1
(FD643020) susfleck_AF_N_12_B07 SUSFLECK Abdominal Fat Norma... 46 2.3 1
(EU066822) Uncultured bacterium clone LM0ACA7ZD12RM1 genomic... 46 2.3 1
(CP001185) Thermosipho africanus TCF52B, complete genome. 46 2.3 1
(DQ409059) Clostridium botulinum HA70 (ha70), HA17 (ha17), H... 44 2.3 3
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 38 2.4 12
(AL034347) Human DNA sequence from clone RP4-676J13 on chrom... 34 2.6 4
(AF461540) Clostridium botulinum strain Hall A-hyper putativ... 44 2.7 3
(Y14239) Clostridium botulinum P-21 and ntnh genes and parti... 44 3.0 2
(X87849) C.botulinum NTNH gene & BoNT/B gene, clone pCBC1-28. 44 3.2 2
(AY810359) Schistosoma japonicum SJCHGC09185 protein mRNA, p... 42 3.7 2
(FC760956) CBBN12392.fwd CBBN Lottia gigantea 3,4,5,6.5d Lar... 38 4.0 2
(FI103282) MUGQ_CH252P483A06Sp6_CH0169_031 CHORI-252 Vervet ... 38 5.3 2
(FC766743) CBBN3341.fwd CBBN Lottia gigantea 3,4,5,6.5d Larv... 38 5.4 2
(FC732366) CBBG7221.fwd CBBG Lottia gigantea 12,15,18h embry... 38 5.6 2
(FC644636) CAXU7288.fwd CAXU Lottia gigantea from female gon... 38 5.8 2
(FC577013) CAXP12613.fwd CAXP Lottia gigantea from head, foo... 38 5.8 2
(FC701966) CAXX9686.fwd CAXX Lottia gigantea from male gonad... 38 6.2 2
(BX005066) Zebrafish DNA sequence from clone CH211-152F23 in... 44 9.0 1
(AC163283) Mus musculus BAC clone RP23-405A16 from chromosom... 44 9.0 1
(AC155312) Mus musculus BAC clone RP23-411F11 from chromosom... 44 9.0 1
(AM440676) Vitis vinifera contig VV78X109161.3, whole genome... 44 9.0 1
(DL144165) RESEQUENCING PATHOGEN MICROARRAY. 44 9.0 1
(DI162488) RESEQUENCING PATHOGEN MICROARRAY. 44 9.0 1
(AL592170) Human DNA sequence from clone RP11-298A19 on chro... 44 9.0 1
(AC138773) Homo sapiens BAC clone RP11-1320L20 from UL, comp... 44 9.0 1
(AC108724) Homo sapiens 3 BAC RP11-413E6 (Roswell Park Cance... 44 9.0 1
(AC133042) Homo sapiens chromosome 3 clone RP11-298A19, *** ... 44 9.0 1
(AC236614) Sorex araneus clone SA_Ba-310D2, WORKING DRAFT SE... 44 9.0 1
(AC177441) Strongylocentrotus purpuratus clone R3-5D23, WORK... 44 9.0 1
(AC012661) Homo sapiens chromosome 11 clone RP11-413E6 map 1... 44 9.0 1
(EK021875) 1092955335978 Global-Ocean-Sampling_GS-31-01-01-1... 44 9.0 1
(EJ934248) 1093018820761 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.0 1
(EJ860782) 1093017974687 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.0 1
(CU252477) Equus caballus GSS, BAC clone CH241-402L9, T7 end... 44 9.0 1
(CV515947) 0048P0012Z_E01_T7 Mimulus guttatus library 1 Mimu... 44 9.0 1
(CB098189) ku50c12.y1 Strongyloides ratti PA female naive pA... 44 9.0 1
(GR188055) CBPG12481.g1 CBPG Mimulus guttatus IM62 roots, se... 44 9.0 1
(GR188054) CBPG12481.b1 CBPG Mimulus guttatus IM62 roots, se... 44 9.0 1
(GR161192) CBPF8166.g1 CBPF Mimulus guttatus IM62 roots, see... 44 9.0 1
(GR133875) CCBX16878.g1 CCBX Mimulus guttatus IM62 floral bu... 44 9.0 1
(GR131353) CCBX15444.g1 CCBX Mimulus guttatus IM62 floral bu... 44 9.0 1
(GR106641) CCBG2090.g1 CCBG Mimulus guttatus IM62 floral bud... 44 9.0 1
(GR082721) CCIF15950.g1 CCIF Mimulus guttatus IM62 leaves (H... 44 9.0 1
(GO956636) CCII8411.g1 CCII Mimulus nasutus SF floral buds (... 44 9.0 1
(FC819146) Sr_pAMT7_013p15_T7 S. ratti mixed stage pAMP Stro... 44 9.0 1
(EV565596) RR4A277TFB RR4(PB) Raphanus raphanistrum subsp. l... 44 9.0 1
(Y13630) Clostridium botulinum HA-70, HA-17, HA-33, P-21, nt... 44 9.0 1
(X78230) C.botulinum type B (NCTC 7273) nontoxic-nonhemagglu... 44 9.0 1
(X78229) C.botulinum type B (ATCC 25765) nontoxic-nonhemaggl... 44 9.0 1
(U63808) Clostridium botulinum 33kD hemagglutinin (hem33/B) ... 44 9.0 1
(EU341304) Clostridium botulinum strain 657Ba boNT/B gene cl... 44 9.0 1
(CP001081) Clostridium botulinum Ba4 str. 657 plasmid pCLJ, ... 44 9.0 1
(CP001057) Clostridium botulinum B str. Eklund 17B plasmid p... 44 9.0 1
(CP000940) Clostridium botulinum B1 str. Okra plasmid pCLD, ... 44 9.0 1
(CP000727) Clostridium botulinum A str. Hall, complete genome. 44 9.0 1
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 44 9.0 1
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 44 9.0 1
(AF461538) Clostridium botulinum strain 62A putative flagell... 44 9.0 1
(AB302853) Clostridium botulinum ha70, ha17, ha33, p21, ntnh... 44 9.0 1
(AB302852) Clostridium botulinum ha70, ha17, ha33, p21, ntnh... 44 9.0 1
(AB232927) Clostridium botulinum B type B progenitor toxin g... 44 9.0 1
>(C90588) Dictyostelium discoideum slug cDNA, clone SSI814.
Length = 564
Score = 664 bits (335), Expect(2) = 0.0
Identities = 345/350 (98%)
Strand = Plus / Plus
Query: 301 ttaccagtgctacctctgctggtcatactcatatggttaaattattattagaatttggtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccagtgctacctctgctggtcatactcatatggttaaattattattagaatttggtg 60
Query: 361 ctgatccaaacactgtaaatgattcaaaaagaactccattacattatgcatcatcaaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgatccaaacactgtaaatgattcaaaaagaactccattacattatgcatcatcaaaag 120
Query: 421 gtagatcagatattgttgatttattattaacacatggagcaaagaatagaaaagatgata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtagatcagatattgttgatttattattaacacatggagcaaagaatagaaaagatgata 180
Query: 481 caggatcagcaccnantcatagagcttcatcaaatggttcagttgcaacagttgaaagat 540
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caggatcagcaccgagtcatagagcttcatcaaatggttcagttgcaacagttgaaagat 240
Query: 541 tattaaaaggtgaagcaantataaantcnacaaataatgaaggtgatacaccattacata 600
|||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct: 241 tattaaaaggtgaagcaagtataaagtcgacaaataatgaaggtgatacaccattacata 300
Query: 601 ttgctgctgaatacaatcatgaggatgttgttgaatgtttattgaaacat 650
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttgctgctgaatacaatcatgaggatgttgttgaatgtttattgaaacat 350
Score = 105 bits (53), Expect(2) = 0.0
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 670 caattgaaaataaagatagtaaaactccaattgatatgtcatcttctcaaact 722
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 caattgaaaataaagatagtaaaactccaattgatatgtcatcttctcaaact 416
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 885,309,959
Number of extensions: 52425662
Number of successful extensions: 4233736
Number of sequences better than 10.0: 85
Length of query: 860
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 836
Effective length of database: 102,084,959,077
Effective search space: 85343025788372
Effective search space used: 85343025788372
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home