Dictyostelium discoideum cDNA Contig-U05238-1

Assembled

Chromosomal Location of Contig-U05238-1

Sequence Contig-U05238-1

GTCAAAATTT TTTTATTTTA TTTTATTTTA AATTAAAATG AATATTTCAA
GACTTTCTAC GGGAATATTA TTTTACATTT TAATATATTG TTATGTTTTG
GATTATAAAA TTATTAGTAA TGCAAAAGCA ATTAATAAGC AACAACAACA
ACCTCAACAT CAACAACATA TAATCTATAG TAAAAATTAT TCAAAACCCA
TATACTCAAA TATTATTGAA AAAAATGGAA ATAATGAAAG TATAATATAT
TATTATGATT ATACAGAATT AATAAGAAAA GAATTACAAA TTGAATTAAA
TAAATTTTTA ATCTATTTGG AAAAATCAAT TCCAAACCAA TATTTATATA
AACCAATTTA TTCTAGAGTA AAAACAATTG AAAGTATGAA AAGAAAAGAA
ATTTCATATA TTGCCGGTAA AATAGTGCAC TGGTTTCAAA TCTTTGATCA
ATGTGGTATT TCAATGATTA TAAATCCAAA TTATAAAACT TCTTTTATTA
TTGAAAAATT AAAAGAATTG GAATTAAATG GTTATTTTAA AATAATTGAA
ATAGAAAGAA AATCAGATTT ATATGGATAT CGTGCTTATC ATGTTGATAT
TGAATTTGGT GAAGAAATTA AAATAGAAAT TCAAATAAGA TCTGTGTATG
AAGATATATT TAATATTATA TCACATGACA ATTATAAAGA GAATAATAAA
AATTTAAAAC TACTTTTAAG TTATCAATCT TTTTTATTAT ACAAAGCAGA
AATGAATCAA CCAACAATTG AATAAATAAT TGTTTAAGTT TTTAAGTCCA
CAAATGTAAT AAAATTATCT ACCCGAAAAA AAAA

Translated Amino Acid Sequence Contig-U05238-1

skffyfilf*IKMNISRLSTGILFYILIYCYVLDYKIISNAKAINKQQQQPQHQQHIIYS
KNYSKPIYSNIIEKNGNNESIIYYYDYTELIRKELQIELNKFLIYLEKSIPNQYLYKPIY
SRVKTIESMKRKEISYIAGKIVHWFQIFDQCGISMIINPNYKTSFIIEKLKELELNGYFK
IIEIERKSDLYGYRAYHVDIEFGEEIKIEIQIRSVYEDIFNIISHDNYKENNKNLKLLLS
YQSFLLYKAEMNQPTIE*iiv*vfkstnviklstrkk

Homology Contig-U05238-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U05238-1 (Contig-U05238-1Q) /CSM_Contig/Conti...  1261  0.0
Contig-U12417-1 (Contig-U12417-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12236-1 (Contig-U12236-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U10870-1 (Contig-U10870-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U01291-1 (Contig-U01291-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U14704-1 (Contig-U14704-1Q) /CSM_Contig/Conti...    36  0.059
Contig-U14598-1 (Contig-U14598-1Q) /CSM_Contig/Conti...    36  0.059
Contig-U12926-1 (Contig-U12926-1Q) /CSM_Contig/Conti...    36  0.059
Contig-U12540-1 (Contig-U12540-1Q) /CSM_Contig/Conti...    36  0.059

Homology Contig-U05238-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(C94131) Dictyostelium discoideum slug cDNA, clone SSG445.        420   0.0    3
(AU038193) Dictyostelium discoideum slug cDNA, clone SSH392.      414   e-163  3
(AU073229) Dictyostelium discoideum slug cDNA, clone SSG445.      216   1e-78  3
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete...    48   1e-05  15
(CP001357) Brachyspira hyodysenteriae WA1, complete genome.        42   5e-05  16
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    34   3e-04  11
(AL844509) Plasmodium falciparum 3D7 chromosome 13.                36   7e-04  16
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    32   0.002  14
(AY496758) Agrodiaetus iphigenides cytochrome oxidase subuni...    34   0.010  4
(CR788319) Zebrafish DNA sequence from clone DKEY-245H10 in ...    40   0.012  8

Homology Contig-U05238-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AL844505_218(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    44   0.007
CP001056_1498(CP001056|pid:none) Clostridium botulinum B str. Ek...    40   0.095
AL844504_299(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.095
CP001078_1408(CP001078|pid:none) Clostridium botulinum E3 str. A...    40   0.095
CP000721_1300(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    40   0.12
CP000962_1666(CP000962|pid:none) Clostridium botulinum A3 str. L...    40   0.12
CP001581_1704(CP001581|pid:none) Clostridium botulinum A2 str. K...    40   0.12
CP001108_67(CP001108|pid:none) Prosthecochloris aestuarii DSM 27...    39   0.16
AL034559_42(AL034559|pid:none) Plasmodium falciparum MAL3P7, com...    39   0.16
AL929354_63(AL929354|pid:none) Plasmodium falciparum strain 3D7,...    39   0.21