Dictyostelium discoideum cDNA Contig-U05162-1

Assembled

Chromosomal Location of Contig-U05162-1

Sequence Contig-U05162-1

AAAATAGAAA TAAACGAGAA ATGTCACAAT CTAAAGCAAG AGATTCAACA
ACCGATTCAG CATGTCATGT ATTAAAAGGT GCAATTGTTA AAGTTTTAGG
TACACCAATA ACAATTTCAG TTGAATGTAA TAATAAAGTT AAAGGTAGAA
TCTCTGTTGA ATATGAACAT CCAGAGAAAC CAAGTCAAGA ACTCAATAAA
ATTGAAGAAG AAGCAAATTT AATCATTAAA CAAAATTTAG AATTTAAAAC
TTTTAAAATT GATAAAAAAG AAGCTGAATC AAAATATAAA TCAAATTTAG
TAAATAATAC ATATATTTAT GATAAATTCC CAGTACCAGA ATCAGTTACA
GAATTATCAT TAGTTGAATT AGAAAATTGG AATATAAATT GTTGTCCAGC
TGTTCATTTA AAAACAACTG GTGAAATTGG TGGAATTAAG ATTGCAGGTA
TTAATCATAG ACCAGCAAAG AAAGAATTGG AATTTAGATT TGATATTGTT
GCTTCTGTTG TTTCAACAAC AACAGCAAAA CCAACTGGTA GAGGTGCTCC
TAAAAAAGAT GCTGCAGTTG TTAATGAAAC ATCTTTTGAA GGTTCAAATT
TAAATTTAAA AGATACAAAT GTTCAATATC TTACTCAAAA AATCATTAAA
TTAGTTTTAG ATTCAAAAGA TTCAAAAGAT AGTGAAAAAG AACAAACAAC
ATTAGAAATT GAACAATTAT TAACAATTTT AAAAAATACA TCATATACTA
ATGGTTCACA AAGTGTCATT ATTTCAAGAA AATAGAAAAT AAAATTAAAA
TTAAAATA

Translated Amino Acid Sequence Contig-U05162-1

NRNKREMSQSKARDSTTDSACHVLKGAIVKVLGTPITISVECNNKVKGRISVEYEHPEKP
SQELNKIEEEANLIIKQNLEFKTFKIDKKEAESKYKSNLVNNTYIYDKFPVPESVTELSL
VELENWNINCCPAVHLKTTGEIGGIKIAGINHRPAKKELEFRFDIVASVVSTTTAKPTGR
GAPKKDAAVVNETSFEGSNLNLKDTNVQYLTQKIIKLVLDSKDSKDSEKEQTTLEIEQLL
TILKNTSYTNGSQSVIISRK*kiklklk

Homology Contig-U05162-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U05162-1 (Contig-U05162-1Q) /CSM_Contig/Conti...  1542  0.0
Contig-U11946-1 (Contig-U11946-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U13905-1 (Contig-U13905-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U12228-1 (Contig-U12228-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U14511-1 (Contig-U14511-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U14059-1 (Contig-U14059-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U12465-1 (Contig-U12465-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U09697-1 (Contig-U09697-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U01015-1 (Contig-U01015-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U14499-1 (Contig-U14499-1Q) /CSM_Contig/Conti...    36  0.057

Homology Contig-U05162-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...   523   0.0    6
(C93077) Dictyostelium discoideum slug cDNA, clone SSF748.        585   0.0    4
(AU262249) Dictyostelium discoideum vegetative cDNA clone:VS...   585   0.0    3
(AU073032) Dictyostelium discoideum slug cDNA, clone SSF748.      383   e-108  2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    38   0.12   12
(CV434677) 58163.1 Suspension culture Solanum tuberosum cDNA...    50   0.14   1
(AE017263) Mesoplasma florum L1 complete genome.                   34   0.18   14
(AM422018) Candidatus Phytoplasma australiense complete genome.    44   0.31   11
(CR788297) Zebrafish DNA sequence from clone DKEY-217L24 in ...    36   0.34   5
(AY061451) Drosophila melanogaster LD38807 full length cDNA.       34   0.39   3

Homology Contig-U05162-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC117176_22(AC117176|pid:none) Dictyostelium discoideum chromoso...   421   e-116
CP001463_1578(CP001463|pid:none) Thermococcus sibiricus MM 739, ...   100   1e-19
A75053(A75053) alanine-tRNA ligase truncated homolog PAB1440 - P...    96   1e-18
B71172(B71172) alanine-tRNA ligase truncated homolog PH0574 - Py...    94   7e-18
CP000077_1085(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6...    89   2e-16
CP000855_1438(CP000855|pid:none) Thermococcus onnurineus NA1, co...    88   4e-16
CP001400_400(CP001400|pid:none) Sulfolobus islandicus M.14.25, c...    86   1e-15
CP000682_405(CP000682|pid:none) Metallosphaera sedula DSM 5348, ...    82   2e-14
AE006641_1145(AE006641|pid:none) Sulfolobus solfataricus P2, com...    79   1e-13
CP001398_2081(CP001398|pid:none) Thermococcus gammatolerans EJ3,...    60   1e-07