Homology Contig-U05162-1 vs DNA
Query= Contig-U05162-1 (Contig-U05162-1Q) /CSM_Contig/Contig-U05162-1Q.Seq.d
(808 letters)
Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 523 0.0 6
(C93077) Dictyostelium discoideum slug cDNA, clone SSF748. 585 0.0 4
(AU262249) Dictyostelium discoideum vegetative cDNA clone:VS... 585 0.0 3
(AU073032) Dictyostelium discoideum slug cDNA, clone SSF748. 383 e-108 2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 0.12 12
(CV434677) 58163.1 Suspension culture Solanum tuberosum cDNA... 50 0.14 1
(AE017263) Mesoplasma florum L1 complete genome. 34 0.18 14
(AM422018) Candidatus Phytoplasma australiense complete genome. 44 0.31 11
(CR788297) Zebrafish DNA sequence from clone DKEY-217L24 in ... 36 0.34 5
(AY061451) Drosophila melanogaster LD38807 full length cDNA. 34 0.39 3
(FP009765) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.44 5
(DQ866050) Simosyrphus grandicornis mitochondrion, complete ... 42 0.45 2
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ... 48 0.54 1
(AC201575) Strongylocentrotus purpuratus clone R3-4009F07, W... 48 0.54 1
(EK524921) 1095515638258 Global-Ocean-Sampling_GS-32-01-01-1... 48 0.54 1
(EJ177798) 1092344107497 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.54 1
(BH106465) RPCI-24-334M22.TJ RPCI-24 Mus musculus genomic cl... 42 0.62 2
(AM431293) Vitis vinifera contig VV78X114116.7, whole genome... 38 0.63 5
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 34 0.92 7
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 34 1.1 8
(AC124350) Mus musculus BAC clone RP24-466K21 from chromosom... 38 1.2 5
(AL035312) Drosophila melanogaster cosmid clone 191D12. 34 1.2 3
(CP000883) Hemiselmis andersenii chromosome 3, complete sequ... 36 1.6 7
(CZ519688) GMW2-64K15a.b2 GMW2 Glycine max genomic, genomic ... 44 1.7 2
(AC175767) Bos taurus clone CH240-382L18, WORKING DRAFT SEQU... 36 1.8 5
(CU469178) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 2.0 4
(AC160642) Gallus gallus BAC clone CH261-121M12 from chromos... 46 2.1 1
(AC118982) Gallus gallus clone WAG-92E21, WORKING DRAFT SEQU... 46 2.1 1
(CU915422) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.1 1
(CU694643) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.1 1
(AC226487) Monodelphis domestica clone VMRC18-859J13, WORKIN... 46 2.1 1
(AC220562) Bos taurus clone CH240-354A7, WORKING DRAFT SEQUE... 46 2.1 1
(AC218500) Bos taurus clone CH240-313L1, WORKING DRAFT SEQUE... 46 2.1 1
(AC172222) Bos taurus clone CH240-274M22, WORKING DRAFT SEQU... 46 2.1 1
(CR704508) Tetraodon nigroviridis full-length cDNA. 46 2.1 1
(CR702382) Tetraodon nigroviridis full-length cDNA. 46 2.1 1
(CR694973) Tetraodon nigroviridis full-length cDNA. 46 2.1 1
(CR691886) Tetraodon nigroviridis full-length cDNA. 46 2.1 1
(CR690727) Tetraodon nigroviridis full-length cDNA. 46 2.1 1
(CR690631) Tetraodon nigroviridis full-length cDNA. 46 2.1 1
(CR689681) Tetraodon nigroviridis full-length cDNA. 46 2.1 1
(CR689223) Tetraodon nigroviridis full-length cDNA. 46 2.1 1
(CR683643) Tetraodon nigroviridis full-length cDNA. 46 2.1 1
(ET078249) QM0AAB6BE03RM2 CCER1 Citrus clementina genomic cl... 46 2.1 1
(ER475263) 1092963997537 Global-Ocean-Sampling_GS-35-01-01-1... 46 2.1 1
(EK056589) 1092960028012 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.1 1
(CC551616) CH240_437E19.T7 CHORI-240 Bos taurus genomic clon... 46 2.1 1
(CC222674) CH261-152B6_RM1.1 CH261 Gallus gallus genomic clo... 46 2.1 1
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 34 2.6 10
(AL354754) Human DNA sequence from clone RP11-281A20 on chro... 42 2.6 2
(EA692991) Sequence 71870 from patent US 7365185. 40 2.8 5
(AM487157) Vitis vinifera contig VV78X047840.25, whole genom... 40 3.7 2
(AC017263) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 34 3.7 3
(EU180575) Solanum lycopersicum chromosome 9 clone C09SLe006... 36 3.9 6
(AC119593) Rattus norvegicus clone CH230-157A12, *** SEQUENC... 38 4.1 3
(CU861921) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 4.1 2
(FP102920) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 4.1 2
(BH004892) BMBAC08M12SP6_PSU Brugia malayi Genomic Bac Libra... 36 4.6 2
(CU222534) Mouse DNA sequence from clone DN-162N18 on chromo... 34 5.0 6
(AC095757) Rattus norvegicus clone CH230-8D17, *** SEQUENCIN... 38 5.1 6
(DE371718) Bombyx mori genomic DNA, BAC clone:BET_633_O03. 32 5.5 2
(CT291319) Sus scrofa genomic clone CH242-374G16, genomic su... 34 5.5 2
(FH507213) CHO_OF4822xa17r1.ab1 CHO_OF4 Nicotiana tabacum ge... 40 5.6 2
(EJ454457) 1093016048418 Global-Ocean-Sampling_GS-28-01-01-1... 38 5.6 2
(AB084781) Mycoplasma mobile genes for P123, Gli349, Gli521,... 32 5.9 5
(AC169397) Macaca mulatta clone CH250-187K22, WORKING DRAFT ... 36 6.0 5
(EJ243347) 1095333018711 Global-Ocean-Sampling_GS-27-01-01-1... 36 6.0 2
(AC116413) Mus musculus chromosome 8, clone RP24-84J11, comp... 38 6.0 6
(EK389457) 1095469494595 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.1 2
(DU865848) 82533 Tomato HindIII BAC Library Solanum lycopers... 36 6.1 2
(CU929579) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 6.2 4
(CR855082) Oryza sativa genomic DNA, chromosome 4, BAC clone... 36 6.3 4
(CQ582716) Sequence 10474 from Patent WO0171042. 34 6.4 3
(AC225386) Homo sapiens FOSMID clone ABC11-750358G12 from ch... 40 7.0 4
(AP010044) Lotus japonicus genomic DNA, clone: LjT30N24, TM0... 34 7.0 3
(FI781780) SIR-2H23TF Sisymbrium irio BAC library SIR Sisymb... 40 7.2 2
(FP102079) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 7.6 4
(AC230052) Bos taurus clone CH240-57F16, WORKING DRAFT SEQUE... 38 7.7 4
(AC187860) Populus trichocarpa clone Pop1-17M24, WORKING DRA... 34 7.8 5
(EJ322802) 1095403419436 Global-Ocean-Sampling_GS-27-01-01-1... 32 7.8 3
(AC138707) Homo sapiens chromosome 17 clone RP11-133E17 map ... 44 7.8 2
(EK393540) 1095469510329 Global-Ocean-Sampling_GS-31-01-01-1... 36 8.1 3
(BX248116) Zebrafish DNA sequence from clone CH211-245G15 in... 44 8.5 1
(DQ310701) Equine torovirus strain Berne 5' UTR and replicas... 44 8.5 1
(BX005480) Mouse DNA sequence from clone RP23-142M12 on chro... 44 8.5 1
(FJ269356) Helianthus annuus cultivar HA383 (PI 5788720) clo... 44 8.5 1
(AP001313) Arabidopsis thaliana genomic DNA, chromosome 3, B... 44 8.5 1
(AB078784) Aspergillus oryzae gene for hypothetical protein,... 44 8.5 1
(AX839844) Sequence 3 from Patent WO02068468. 44 8.5 1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 44 8.5 1
(AL157820) Human DNA sequence from clone RP11-8D7 on chromos... 44 8.5 1
(AC148509) Macropus eugenii clone ME_KBa-282N22, WORKING DRA... 44 8.5 1
(AC137232) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 44 8.5 1
(AC137228) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 44 8.5 1
(AC133718) Rattus norvegicus clone CH230-33F7, WORKING DRAFT... 44 8.5 1
(AC131413) Rattus norvegicus clone CH230-373L14, WORKING DRA... 44 8.5 1
(AC127767) Rattus norvegicus clone CH230-152F4, WORKING DRAF... 44 8.5 1
(AC126521) Rattus norvegicus clone CH230-114A19, *** SEQUENC... 44 8.5 1
(AC123164) Rattus norvegicus clone CH230-166O19, *** SEQUENC... 44 8.5 1
(AC118907) Rattus norvegicus clone CH230-202H16, *** SEQUENC... 44 8.5 1
(AC114177) Rattus norvegicus clone CH230-187P4, *** SEQUENCI... 44 8.5 1
(AC106667) Rattus norvegicus clone CH230-101E3, *** SEQUENCI... 44 8.5 1
(AC106133) Rattus norvegicus clone CH230-234J23, *** SEQUENC... 44 8.5 1
(AC105889) Rattus norvegicus clone CH230-167O3, WORKING DRAF... 44 8.5 1
(AC098771) Rattus norvegicus clone CH230-121L7, *** SEQUENCI... 44 8.5 1
(FJ789650) Brassica rapa subsp. pekinensis, pooled multiple ... 44 8.5 1
(FJ789644) Brassica rapa subsp. pekinensis, pooled multiple ... 44 8.5 1
(CU855592) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.5 1
(CU694381) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 8.5 1
(CU571166) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 8.5 1
(AC080047) Homo sapiens chromosome 13 clone RP11-283H22 map ... 44 8.5 1
(CU457469) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.5 1
(AC235817) Glycine max strain Williams 82 clone GM_WBa0006O0... 44 8.5 1
(AC170705) Oryctolagus cuniculus clone LB1-210P1, WORKING DR... 44 8.5 1
(AC166875) Oryctolagus cuniculus clone LB1-275O22, WORKING D... 44 8.5 1
(AC165386) Oryctolagus cuniculus clone LB1-13H23, WORKING DR... 44 8.5 1
(AC022776) Mus musculus chromosome X clone RP23-94A8 map X, ... 44 8.5 1
(CR690562) Tetraodon nigroviridis full-length cDNA. 44 8.5 1
(CR689139) Tetraodon nigroviridis full-length cDNA. 44 8.5 1
(BX648882) Homo sapiens mRNA; cDNA DKFZp686G08243 (from clon... 44 8.5 1
(BH001347) Gm_ISb001_035_K17F ISU Soybean BAC Library (pBelo... 44 8.5 1
(ET969775) CHO_OF650xa10r1.ab1 CHO_OF Nicotiana tabacum geno... 44 8.5 1
(ER429885) 1092963772916 Global-Ocean-Sampling_GS-35-01-01-1... 44 8.5 1
(EK511781) 1095515482027 Global-Ocean-Sampling_GS-32-01-01-1... 44 8.5 1
(EJ847601) 1093017863183 Global-Ocean-Sampling_GS-30-02-01-1... 44 8.5 1
(EJ647367) 1092351918475 Global-Ocean-Sampling_GS-30-02-01-1... 44 8.5 1
(EJ225197) 1092351409498 Global-Ocean-Sampling_GS-27-01-01-1... 44 8.5 1
(EJ205760) 1092344344493 Global-Ocean-Sampling_GS-27-01-01-1... 44 8.5 1
(ED632814) GM_WBa0035K17.f GM_WBa Glycine max genomic clone ... 44 8.5 1
(ED165543) AUAC-aam17g11.b1 Ascaris suum whole genome shotgu... 44 8.5 1
(ED064701) AUAC-aaz86a09.g1 Ascaris suum whole genome shotgu... 44 8.5 1
(ED019463) SBA013_H07.r Sugar beet BAC library USH20 (Code S... 44 8.5 1
(DX293576) OR_ABa0198H16.f OR_ABa Oryza ridleyi genomic clon... 44 8.5 1
(CZ867086) OC__Ba0263G07.r OC__Ba Oryza coarctata genomic cl... 44 8.5 1
(CT044858) Sus scrofa genomic clone PigE-211N2, genomic surv... 44 8.5 1
(CE443024) tigr-gss-dog-17000336184363 Dog Library Canis lup... 44 8.5 1
(BZ117386) CH230-365J13.TV CHORI-230 Segment 2 Rattus norveg... 44 8.5 1
(BX237055) Danio rerio genomic clone DKEY-282C13, genomic su... 44 8.5 1
(BH847005) SALK_012652.54.75.x Arabidopsis thaliana TDNA ins... 44 8.5 1
(EG674582) RCRD620TP Castor bean cDNA library from roots, 1.... 44 8.5 1
(DT734220) EST1168070 Aquilegia cDNA library Aquilegia formo... 44 8.5 1
(DR938018) EST1129557 Aquilegia cDNA library Aquilegia formo... 44 8.5 1
(CN573780) rc42h01.x1 Meloidogyne hapla egg pAMP1 v1 Meloido... 44 8.5 1
(BJ324813) Dictyostelium discoideum cDNA clone:dda8l05, 5' e... 44 8.5 1
(GE898565) 1112934806642 BABEVCEREB-C-01-1-7KB Papio anubis ... 44 8.5 1
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 44 8.5 1
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 44 8.5 1
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 44 8.5 1
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 36 8.9 16
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont... 34 8.9 10
(AY333070) Drosophila virilis antennapedia (Antp), CG10013 (... 42 9.0 5
(AJ243901) Mycoplasma hominis p75 gene, strain PG21. 40 9.1 3
>(AC117176) Dictyostelium discoideum chromosome 2 map 5018074-5200947
strain AX4, complete sequence.
Length = 182871
Score = 523 bits (264), Expect(6) = 0.0
Identities = 264/264 (100%)
Strand = Plus / Plus
Query: 341 atcagttacagaattatcattagttgaattagaaaattggaatataaattgttgtccagc 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40090 atcagttacagaattatcattagttgaattagaaaattggaatataaattgttgtccagc 40149
Query: 401 tgttcatttaaaaacaactggtgaaattggtggaattaagattgcaggtattaatcatag 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40150 tgttcatttaaaaacaactggtgaaattggtggaattaagattgcaggtattaatcatag 40209
Query: 461 accagcaaagaaagaattggaatttagatttgatattgttgcttctgttgtttcaacaac 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40210 accagcaaagaaagaattggaatttagatttgatattgttgcttctgttgtttcaacaac 40269
Query: 521 aacagcaaaaccaactggtagaggtgctcctaaaaaagatgctgcagttgttaatgaaac 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40270 aacagcaaaaccaactggtagaggtgctcctaaaaaagatgctgcagttgttaatgaaac 40329
Query: 581 atcttttgaaggttcaaatttaaa 604
||||||||||||||||||||||||
Sbjct: 40330 atcttttgaaggttcaaatttaaa 40353
Score = 383 bits (193), Expect(6) = 0.0
Identities = 193/193 (100%)
Strand = Plus / Plus
Query: 1 aaaatagaaataaacgagaaatgtcacaatctaaagcaagagattcaacaaccgattcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39637 aaaatagaaataaacgagaaatgtcacaatctaaagcaagagattcaacaaccgattcag 39696
Query: 61 catgtcatgtattaaaaggtgcaattgttaaagttttaggtacaccaataacaatttcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39697 catgtcatgtattaaaaggtgcaattgttaaagttttaggtacaccaataacaatttcag 39756
Query: 121 ttgaatgtaataataaagttaaaggtagaatctctgttgaatatgaacatccagagaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39757 ttgaatgtaataataaagttaaaggtagaatctctgttgaatatgaacatccagagaaac 39816
Query: 181 caagtcaagaact 193
|||||||||||||
Sbjct: 39817 caagtcaagaact 39829
Score = 163 bits (82), Expect(6) = 0.0
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 697 caacattagaaattgaacaattattaacaattttaaaaaatacatcatatactaatggtt 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40440 caacattagaaattgaacaattattaacaattttaaaaaatacatcatatactaatggtt 40499
Query: 757 cacaaagtgtcattatttcaag 778
||||||||||||||||||||||
Sbjct: 40500 cacaaagtgtcattatttcaag 40521
Score = 65.9 bits (33), Expect(6) = 0.0
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 602 aaatttaaaagatacaaatgttcaatatcttac 634
|||||||||||||||||||||||||||||||||
Sbjct: 40345 aaatttaaaagatacaaatgttcaatatcttac 40377
Score = 61.9 bits (31), Expect(6) = 0.0
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 310 catatatttatgataaattcccagtaccaga 340
|||||||||||||||||||||||||||||||
Sbjct: 39949 catatatttatgataaattcccagtaccaga 39979
Score = 44.1 bits (22), Expect(6) = 0.0
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 193 tcaataaaattgaagaagaagc 214
||||||||||||||||||||||
Sbjct: 39832 tcaataaaattgaagaagaagc 39853
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 965,388,344
Number of extensions: 65426497
Number of successful extensions: 5954852
Number of sequences better than 10.0: 153
Length of query: 808
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 784
Effective length of database: 102,084,959,077
Effective search space: 80034607916368
Effective search space used: 80034607916368
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home