Dictyostelium discoideum cDNA Contig-U05050-1

Assembled

Chromosomal Location of Contig-U05050-1

Sequence Contig-U05050-1

TAATAATATA ATATATATAT ATATATATAT ATATAAATAT AGATAAAGAA
TGCCTATTAT CTATTCACTT GTAGCAAGAG GATCATCTGT TTTAGCAGAG
TTCACAAGTA CTAATGGTAA TTTTGTTACA ATTACAAGAA GNNNNTANNT
NAATCCCACC AAATGATACA AAAATGTCCT ATGTTTATGA AAAGTATATT
TTTCATTATT TAGTTAGTGA TACATTAACA TATCTTTGTA TGGCAGATGA
AGAATTTGGT AGAAGAATAC CATTTACATT TTTAGATGAT GTAAAGAATA
GATTTAAATC AATGTATGGT GATAAAGGTA AAACAGCAAT TGCATATGGT
ATGAATTCAG ATTTCTCAAG AACATTGGAG AATTTAATGG ATCATTATTC
AACACGTGTA GATACAATGA GTCGTACAAT GGCTGAAATT GATGAAGTTA
AAAATATATT AGTTAGTGAT ATAGCTCCAC AATTATTAAA ACGTGGTGAG
AAAATTGAAA TGTTGGTTGA ACGTACTGAT ACACTCAATC AACAATCTTT
TAAATTTAAA AAACAAAGTA AACAATTAAA ATGTGCAATG TGGTGGAAAA
ATGTTAAATT AATGTTAGTT TTAGGTGCTA TTGTACTTAT TATTATTTTC
ATTATTGTTT GTTATGTCAT ATTGTGATGG TTTCCGTTCA GGTTCAAAAT
GTCGTTCATC ACCATCATCA AATTCAACAC CAACCCCAAC TCCAACCGAA
ACCCCAACTC CAACTCCAAC TCCAACTTCA ACTCCAACTC CATCACAATT
ATTAGAAACT CTATTAAACC AATTTTAGAT ATCTTTAAAA AA

Translated Amino Acid Sequence Contig-U05050-1

ii*yiyiyiyinidkecllsihl*qedhlf*QSSQVLMVILLQLQEXXXXIPPNDTKMSY
VYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMYGDKGKTAIAYGMNSD
FSRTLENLMDHYSTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTDTLNQ
QSFKFKKQSKQLKCAMWWKNVKLMLVLGAIVLIIIFIIVCYVIL*wfpfrfkmsfitiik
fntnpnsnrnpnsnsnsnfnsnsitiirnsikpildifkk

Homology Contig-U05050-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U05050-1 (Contig-U05050-1Q) /CSM_Contig/Conti...   961  0.0
Contig-U09396-1 (Contig-U09396-1Q) /CSM_Contig/Conti...    50  4e-06
Contig-U11910-1 (Contig-U11910-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11806-1 (Contig-U11806-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11142-1 (Contig-U11142-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U04372-1 (Contig-U04372-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14255-1 (Contig-U14255-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U12241-1 (Contig-U12241-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U12216-1 (Contig-U12216-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U11980-1 (Contig-U11980-1Q) /CSM_Contig/Conti...    40  0.004

Homology Contig-U05050-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...   414   0.0    8
(C84713) Dictyostelium discoideum slug cDNA, clone SSE713.        297   e-149  4
(AU072495) Dictyostelium discoideum slug cDNA, clone SSE713.      353   7e-93  1
(CU104707) Zebrafish DNA sequence from clone CH73-210H12 in ...    50   0.14   1
(DQ462147) Chenopodium quinoa clone QATG086 SSR marker seque...    50   0.14   1
(CU467656) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    50   0.14   1
(CU234211) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    50   0.14   1
(CU076104) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    50   0.14   1
(CU074401) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    50   0.14   1
(AC181899) Strongylocentrotus purpuratus clone R3-1015I01, W...    50   0.14   1

Homology Contig-U05050-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q86AQ7) RecName: Full=Vesicle-associated membrane protein 7B;  ...   279   1e-86
(Q9LFP1) RecName: Full=Vesicle-associated membrane protein 713; ...   127   6e-30
EF147419_1(EF147419|pid:none) Populus trichocarpa clone WS01230_...   122   4e-29
(O49377) RecName: Full=Vesicle-associated membrane protein 711; ...   121   5e-29
(Q9SIQ9) RecName: Full=Vesicle-associated membrane protein 712; ...   120   5e-28
AK060093_1(AK060093|pid:none) Oryza sativa Japonica Group cDNA c...   119   9e-28
GM754336_1(GM754336|pid:none) Sequence 29 from Patent WO20081168...   112   1e-27
EU964925_1(EU964925|pid:none) Zea mays clone 282584 vesicle-asso...   117   2e-27
AK064750_1(AK064750|pid:none) Oryza sativa Japonica Group cDNA c...   125   2e-27
AK065311_1(AK065311|pid:none) Oryza sativa Japonica Group cDNA c...   125   2e-27