Homology Contig-U05050-1 vs DNA
Query= Contig-U05050-1 (Contig-U05050-1Q) /CSM_Contig/Contig-U05050-1Q.Seq.d
(842 letters)
Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 414 0.0 8
(C84713) Dictyostelium discoideum slug cDNA, clone SSE713. 297 e-149 4
(AU072495) Dictyostelium discoideum slug cDNA, clone SSE713. 353 7e-93 1
(CU104707) Zebrafish DNA sequence from clone CH73-210H12 in ... 50 0.14 1
(DQ462147) Chenopodium quinoa clone QATG086 SSR marker seque... 50 0.14 1
(CU467656) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 50 0.14 1
(CU234211) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 50 0.14 1
(CU076104) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 50 0.14 1
(CU074401) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 50 0.14 1
(AC181899) Strongylocentrotus purpuratus clone R3-1015I01, W... 50 0.14 1
(CP000806) Cyanothece sp. ATCC 51142 circular chromosome, co... 50 0.14 1
(AF430396) Penaeus esculentus microsatellite CSGES268 sequence. 42 0.26 2
(CV990356) IpCGFr1_4_C11_23 IpCGFr1 Ictalurus punctatus cDNA... 42 0.41 2
(AL360158) Human DNA sequence from clone RP11-33I5 on chromo... 48 0.57 1
(AC095103) Rattus norvegicus clone CH230-7J4, *** SEQUENCING... 48 0.57 1
(AC095093) Rattus norvegicus clone CH230-7F18, *** SEQUENCIN... 48 0.57 1
(AC179621) Strongylocentrotus purpuratus clone R3-1028F15, W... 48 0.57 1
(AC179002) Strongylocentrotus purpuratus clone R3-3122P14, W... 48 0.57 1
(DY800852) MTUNUL1.P54.A03 NUL Populus fremontii x Populus a... 48 0.57 1
(DT481740) WS02532.BR_M15 PT-MB-N-A-15 Populus trichocarpa c... 48 0.57 1
(DB879059) Populus nigra mRNA, clone: PnFL2-026_C09, 5'end. 48 0.57 1
(CK106024) UA51CPC05.5pR Populus dormant cambium cDNA librar... 48 0.57 1
(BU820098) UA51CPC05 Populus tremula cambium cDNA library Po... 48 0.57 1
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 38 0.62 16
(CT025896) Zebrafish DNA sequence from clone CH211-22H6 in l... 40 0.72 3
(AC159879) Mus musculus BAC clone RP24-497H22 from chromosom... 34 1.2 2
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 36 1.2 2
(AC158354) Mus musculus BAC clone RP24-160P23 from chromosom... 34 1.2 2
(FI128338) MUGQ_CH252P507N14T7_CH0230_051 CHORI-252 Vervet M... 44 1.4 2
(CX793399) JGI_CAAJ474.fwd NIH_XGC_tropBrn2 Xenopus (Siluran... 38 1.6 2
(CT583664) Zebrafish DNA sequence from clone CH211-136O23 in... 46 2.2 1
(AM452666) Vitis vinifera contig VV78X253716.2, whole genome... 46 2.2 1
(AM450927) Vitis vinifera, whole genome shotgun sequence, co... 46 2.2 1
(AC213016) Populus trichocarpa clone POP038-D19, complete se... 46 2.2 1
(AC232954) Microcebus murinus clone CH257-205K5, WORKING DRA... 46 2.2 1
(AC184392) Strongylocentrotus purpuratus clone R3-3116E22, W... 46 2.2 1
(AC181707) Strongylocentrotus purpuratus clone R3-1040A07, W... 46 2.2 1
(AC179909) Strongylocentrotus purpuratus clone R3-1003F4, WO... 46 2.2 1
(AC177198) Strongylocentrotus purpuratus clone R3-4018N15, W... 46 2.2 1
(AC175835) Strongylocentrotus purpuratus clone R3-3019D11, W... 46 2.2 1
(FI821528) SIR-51B2JR Sisymbrium irio BAC library SIR Sisymb... 46 2.2 1
(EI945847) akm3az42f Km3-3010m-Ionian Sea marine metagenome ... 46 2.2 1
(AL448740) Paramecium tetraurelia sequence R16H12r of the en... 46 2.2 1
(CE105465) tigr-gss-dog-17000371154990 Dog Library Canis lup... 46 2.2 1
(AG187450) Pan troglodytes DNA, clone:PTB-004N22.R. 46 2.2 1
(DN551390) Cm_mx0_34e01_SP6 Green Shore Crab Multiple Tissue... 46 2.2 1
(DN550831) Cm_mx0_28b07_SP6 Green Shore Crab Multiple Tissue... 46 2.2 1
(CX183136) F08_45-112_12.ab1 leaf inoculated with Marssonia ... 46 2.2 1
(BW308302) Ciona intestinalis cDNA, clone:ciht001g01, 5' end... 46 2.2 1
(BW183842) Ciona intestinalis cDNA, clone:rciht001g01, 3' en... 46 2.2 1
(FE177484) LV_NC_RA17C05f Litopenaeus vannamei nerve cord cD... 46 2.2 1
(FE093341) LV_GL_RA46B04f Litopenaeus vannamei gills cDNA li... 46 2.2 1
(FE086832) LV_GL_RA32K08r Litopenaeus vannamei gills cDNA li... 46 2.2 1
(EY634745) CAWW24001.fwd CAWW Capitella sp. I ECS-2004 Subtr... 46 2.2 1
(EY634744) CAWW24001.rev CAWW Capitella sp. I ECS-2004 Subtr... 46 2.2 1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 40 2.3 11
(AF482962) Dictyostelium discoideum ABC transporter AbcH.3 (... 40 2.3 2
(AC180073) Strongylocentrotus purpuratus clone R3-3029M15, W... 40 2.3 3
(AC150258) Aedes aegypti, clone XX-8F24, complete sequence. 40 2.4 2
(CR940352) Theileria annulata genomic DNA chromosome 3. 42 2.6 16
(CT025665) Mouse DNA sequence from clone RP24-340L11 on chro... 38 3.2 3
(AC225734) Macaca mulatta clone CH250-385M6, WORKING DRAFT S... 44 3.5 3
(CS560530) Sequence 1 from Patent WO2007020617. 32 3.7 8
(CP000234) Lactobacillus salivarius UCC118 plasmid pMP118, c... 32 3.7 8
(FI781240) SIR-7K4JR Sisymbrium irio BAC library SIR Sisymbr... 38 4.0 3
(AC179448) Strongylocentrotus purpuratus clone R3-1040G24, W... 34 4.3 2
(GR199989) CBPI3814.g1 CBPI Mimulus lewisii floral buds (L) ... 40 4.6 2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 40 4.9 8
(AC108739) Homo sapiens 3 BAC RP11-481M14 (Roswell Park Canc... 40 5.1 3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 38 7.1 8
(CR855364) Zebrafish DNA sequence from clone CH211-12P2 in l... 44 8.8 1
(CR759893) Zebrafish DNA sequence from clone DKEY-220K22 in ... 44 8.8 1
(BX950214) Zebrafish DNA sequence from clone CH211-214C2 in ... 44 8.8 1
(BX890608) Zebrafish DNA sequence from clone CH211-195J11 in... 44 8.8 1
(BS000239) Pan troglodytes chromosome 22 clone:PTB-153E07, m... 44 8.8 1
(CU326372) S.lycopersicum DNA sequence from clone SL_MboI-30C9. 44 8.8 1
(AM482103) Vitis vinifera contig VV78X221588.9, whole genome... 44 8.8 1
(AM466316) Vitis vinifera contig VV78X135844.8, whole genome... 44 8.8 1
(AC216417) Populus trichocarpa clone POP051-F19, complete se... 44 8.8 1
(AC156160) Monodelphis domestica, clone XX-23H4, complete se... 44 8.8 1
(AC087180) Sus scrofa clone RP44-338P10, complete sequence. 44 8.8 1
(AL844509) Plasmodium falciparum 3D7 chromosome 13. 44 8.8 1
(AL844503) Plasmodium falciparum 3D7 chromosome 4. 44 8.8 1
(AL603839) Human DNA sequence from clone RP11-656D10 on chro... 44 8.8 1
(AL163303) Homo sapiens chromosome 21 segment HS21C103. 44 8.8 1
(AL133493) Homo sapiens chromosome 21sequence from BAC GS1-5... 44 8.8 1
(AC104117) Homo sapiens chromosome 5 clone RP11-281O15, comp... 44 8.8 1
(AC069410) Homo sapiens 3 BAC RP11-32M21 (Roswell Park Cance... 44 8.8 1
(AC007527) Homo sapiens 12p12 BAC RPCI11-4N23 (Roswell Park ... 44 8.8 1
(CU861566) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.8 1
(CU694675) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.8 1
(CU606914) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.8 1
(AC025845) Homo sapiens clone RP11-281O15, WORKING DRAFT SEQ... 44 8.8 1
(AC226644) Microcebus murinus clone CH257-93J16, WORKING DRA... 44 8.8 1
(AC226642) Microcebus murinus clone CH257-222K10, WORKING DR... 44 8.8 1
(AC226271) Macaca mulatta clone CH250-173L7, WORKING DRAFT S... 44 8.8 1
(AC225738) Gorilla gorilla gorilla clone CH255-490O2, WORKIN... 44 8.8 1
(AC223340) Bos taurus clone CH240-421O7, WORKING DRAFT SEQUE... 44 8.8 1
(AC216666) Solanum lycopersicum chromosome 6 clone C06SLm013... 44 8.8 1
(AC181081) Strongylocentrotus purpuratus clone R3-3048G17, W... 44 8.8 1
(AC181010) Strongylocentrotus purpuratus clone R3-3053M16, W... 44 8.8 1
(AC180577) Strongylocentrotus purpuratus clone R3-3092O15, W... 44 8.8 1
(AC178697) Strongylocentrotus purpuratus clone R3-12H19, WOR... 44 8.8 1
(AC176468) Strongylocentrotus purpuratus clone R3-114M22, WO... 44 8.8 1
(AC174513) Strongylocentrotus purpuratus clone R3-1110N4, WO... 44 8.8 1
(AC168744) Strongylocentrotus purpuratus clone R3-3010C19, W... 44 8.8 1
(AC166071) Monodelphis domestica clone XX-2478B3, *** SEQUEN... 44 8.8 1
(AC021065) Homo sapiens, WORKING DRAFT SEQUENCE. 44 8.8 1
(AC012285) Homo sapiens clone 3_F_23, *** SEQUENCING IN PROG... 44 8.8 1
(AQ618394) HS_5167_A2_A08_SP6E RPCI-11 Human Male BAC Librar... 44 8.8 1
(FH032171) CHO_OF3254xp18r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 8.8 1
(EK327581) 1095467011863 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.8 1
(EC980572) WIN1110.C21_C22 Muscat Hamburg pre-veraison berry... 44 8.8 1
(EB330357) CNSN01-F-135218-501 Normalized CNS library (juven... 44 8.8 1
(DN935783) AGENCOURT_49984562 NCI_CGAP_Pr50 Rattus norvegicu... 44 8.8 1
(AU087190) Plasmodium falciparum 3D7 cDNA clone from Sugano ... 44 8.8 1
(BW950694) Branchiostoma floridae cDNA, neurula clone:bfne16... 44 8.8 1
(BW948903) Branchiostoma floridae cDNA, neurula clone:bfne15... 44 8.8 1
(BM274440) PfESToaa45h02.y1 Plasmodium falciparum 3D7 gameto... 44 8.8 1
(BG675272) 602621563F1 NCI_CGAP_Skn3 Homo sapiens cDNA clone... 44 8.8 1
(EW538092) rret26_j13.y1 ret Sus scrofa cDNA 5', mRNA sequence. 44 8.8 1
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 44 8.8 1
>(AC116977) Dictyostelium discoideum chromosome 2 map 5515173-5817331
strain AX4, complete sequence.
Length = 302156
Score = 414 bits (209), Expect(8) = 0.0
Identities = 209/209 (100%)
Strand = Plus / Plus
Query: 194 gtatatttttcattatttagttagtgatacattaacatatctttgtatggcagatgaaga 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66680 gtatatttttcattatttagttagtgatacattaacatatctttgtatggcagatgaaga 66739
Query: 254 atttggtagaagaataccatttacatttttagatgatgtaaagaatagatttaaatcaat 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66740 atttggtagaagaataccatttacatttttagatgatgtaaagaatagatttaaatcaat 66799
Query: 314 gtatggtgataaaggtaaaacagcaattgcatatggtatgaattcagatttctcaagaac 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66800 gtatggtgataaaggtaaaacagcaattgcatatggtatgaattcagatttctcaagaac 66859
Query: 374 attggagaatttaatggatcattattcaa 402
|||||||||||||||||||||||||||||
Sbjct: 66860 attggagaatttaatggatcattattcaa 66888
Score = 297 bits (150), Expect(8) = 0.0
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 400 caacacgtgtagatacaatgagtcgtacaatggctgaaattgatgaagttaaaaatatat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66892 caacacgtgtagatacaatgagtcgtacaatggctgaaattgatgaagttaaaaatatat 66951
Query: 460 tagttagtgatatagctccacaattattaaaacgtggtgagaaaattgaaatgttggttg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66952 tagttagtgatatagctccacaattattaaaacgtggtgagaaaattgaaatgttggttg 67011
Query: 520 aacgtactgatacactcaatcaacaatctt 549
||||||||||||||||||||||||||||||
Sbjct: 67012 aacgtactgatacactcaatcaacaatctt 67041
Score = 198 bits (100), Expect(8) = 0.0
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 42 gataaagaatgcctattatctattcacttgtagcaagaggatcatctgttttagcagagt 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66380 gataaagaatgcctattatctattcacttgtagcaagaggatcatctgttttagcagagt 66439
Query: 102 tcacaagtactaatggtaattttgttacaattacaagaag 141
||||||||||||||||||||||||||||||||||||||||
Sbjct: 66440 tcacaagtactaatggtaattttgttacaattacaagaag 66479
Score = 131 bits (66), Expect(8) = 0.0
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 659 ttgttatgtcatattgtgatggtttccgttcaggttcaaaatgtcgttcatcaccatcat 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67306 ttgttatgtcatattgtgatggtttccgttcaggttcaaaatgtcgttcatcaccatcat 67365
Query: 719 caaatt 724
||||||
Sbjct: 67366 caaatt 67371
Score = 99.6 bits (50), Expect(8) = 0.0
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 793 tcacaattattagaaactctattaaaccaattttagatatctttaaaaaa 842
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67440 tcacaattattagaaactctattaaaccaattttagatatctttaaaaaa 67489
Score = 91.7 bits (46), Expect(8) = 0.0
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 152 aatcccaccaaatgatacaaaaatgtcctatgtttatgaaaagtat 197
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66492 aatcccaccaaatgatacaaaaatgtcctatgtttatgaaaagtat 66537
Score = 42.1 bits (21), Expect(8) = 0.0
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 618 gttttaggtgctattgtactt 638
|||||||||||||||||||||
Sbjct: 67110 gttttaggtgctattgtactt 67130
Score = 42.1 bits (21), Expect(8) = 0.0
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 639 attattattttcattattgtt 659
|||||||||||||||||||||
Sbjct: 67290 attattattttcattattgtt 67310
Score = 34.2 bits (17), Expect(10) = 0.27
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 181 atgtttatgaaaagtatattt 201
||||||||| |||||||||||
Sbjct: 79538 atgtttatgtaaagtatattt 79558
Score = 34.2 bits (17), Expect(10) = 0.27
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 302 atttaaatcaatgtatggtga 322
||||||||||||| |||||||
Sbjct: 90864 atttaaatcaatggatggtga 90884
Score = 34.2 bits (17), Expect(10) = 0.27
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 637 ttattattattttcatt 653
|||||||||||||||||
Sbjct: 147060 ttattattattttcatt 147076
Score = 28.2 bits (14), Expect(10) = 0.27
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 497 tgagaaaattgaaa 510
||||||||||||||
Sbjct: 146010 tgagaaaattgaaa 146023
Score = 28.2 bits (14), Expect(10) = 0.27
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 706 tcatcaccatcatcaaat 723
|||||| |||||||||||
Sbjct: 179926 tcatcatcatcatcaaat 179943
Score = 28.2 bits (14), Expect(10) = 0.27
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 814 ttaaaccaatttta 827
||||||||||||||
Sbjct: 296893 ttaaaccaatttta 296906
Score = 26.3 bits (13), Expect(10) = 0.27
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 112 taatggtaattttgtta 128
||||| |||||||||||
Sbjct: 65270 taatgttaattttgtta 65286
Score = 26.3 bits (13), Expect(10) = 0.27
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 438 attgatgaagtta 450
|||||||||||||
Sbjct: 114185 attgatgaagtta 114197
Score = 26.3 bits (13), Expect(10) = 0.27
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 669 atattgtgatggt 681
|||||||||||||
Sbjct: 149189 atattgtgatggt 149201
Score = 26.3 bits (13), Expect(10) = 0.27
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 796 caattattagaaa 808
|||||||||||||
Sbjct: 241923 caattattagaaa 241935
Score = 40.1 bits (20), Expect(8) = 4.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 637 ttattattattttcattatt 656
||||||||||||||||||||
Sbjct: 99649 ttattattattttcattatt 99630
Score = 32.2 bits (16), Expect(8) = 4.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 705 ttcatcaccatcatca 720
||||||||||||||||
Sbjct: 30882 ttcatcaccatcatca 30867
Score = 32.2 bits (16), Expect(8) = 4.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 437 aattgatgaagttaaa 452
||||||||||||||||
Sbjct: 271335 aattgatgaagttaaa 271320
Score = 28.2 bits (14), Expect(8) = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 533 actcaatcaacaat 546
||||||||||||||
Sbjct: 153546 actcaatcaacaat 153533
Score = 26.3 bits (13), Expect(8) = 4.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 688 tcaggttcaaaat 700
|||||||||||||
Sbjct: 89012 tcaggttcaaaat 89000
Score = 26.3 bits (13), Expect(8) = 4.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 509 aatgttggttgaa 521
|||||||||||||
Sbjct: 155122 aatgttggttgaa 155110
Score = 26.3 bits (13), Expect(8) = 4.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 499 agaaaattgaaat 511
|||||||||||||
Sbjct: 186464 agaaaattgaaat 186452
Score = 26.3 bits (13), Expect(8) = 4.0
Identities = 16/17 (94%)
Strand = Plus / Minus
Query: 427 caatggctgaaattgat 443
||||| |||||||||||
Sbjct: 290745 caatgtctgaaattgat 290729
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 884,275,471
Number of extensions: 60793336
Number of successful extensions: 5236956
Number of sequences better than 10.0: 123
Length of query: 842
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 818
Effective length of database: 102,084,959,077
Effective search space: 83505496524986
Effective search space used: 83505496524986
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home