Dictyostelium discoideum cDNA Contig-U05015-1

Assembled

Chromosomal Location of Contig-U05015-1

Sequence Contig-U05015-1

AAAAAATTTT AAAGTAATAA AAATTATGTC GTCACTAAAA CTTCAAGTTA
ATAGACCACT AACTCCTACA CCGACTCCAA CACCAAATTC AACTCAAACT
ACTGTAACAC CATTAAAAAG AAGTTGTTAT TTAGGTCGTG CTGGTCCTTA
CCATGATGAG TTACCACCTG GAAGAACTAG AGCTGAGGTT GAAGAAGCCA
AAAAATTAGG AATTTGCTTA GAAGATATTA CAATTTATAA AATTACAATT
AAAAGAGGAA TTATAAATAA NGCAACTGAT TTAAATGGTT TATCTGATGG
ATATTGTAAA ATATTTAAAT CATATAGAGA TGAATTTGGT GATCAAATTA
GAATTAAATT ATTTAAAACT CAGGTTTGTA AAAAAACATT AAAACCAGAA
TGGAATTATG AAGGAATTTA TTCAATTTTT GAAAGTTGTC AAAATTTACG
TTTAGAACTA TGGGATAAAT CTTTACTAAA GAATGATTAC ATTGGTTGTA
AATCAATCTA TCATAAAGAT ATTGAGTTTG GTGAACCATT AGAAGTTGAT
TTACAACTTT CATATAAAAA GAAAATTGAA AAAATTGTTG GCTCTGTCGT
TATTTCCGTT GAAAAATTAG AAGTAAACGA AGAAAATAAA CAAAAATGTT
TAAATGGAAC TAATCTTTAT GATAGACTTC ATGTTAAACC AAGAAAACCA
AGAAAAATTA GAGTTCCTTC AAATTTCCAA AATTAATAAA ATTAAATTTT
AAAATTTTAA ATAAAATATT TTTATTTAAT ATTTGTAATT ACAATAACAA
TTTAA

Translated Amino Acid Sequence Contig-U05015-1

KNFKVIKIMSSLKLQVNRPLTPTPTPTPNSTQTTVTPLKRSCYLGRAGPYHDELPPGRTR
AEVEEAKKLGICLEDITIYKITIKRGIINXATDLNGLSDGYCKIFKSYRDEFGDQIRIKL
FKTQVCKKTLKPEWNYEGIYSIFESCQNLRLELWDKSLLKNDYIGCKSIYHKDIEFGEPL
EVDLQLSYKKKIEKIVGSVVISVEKLEVNEENKQKCLNGTNLYDRLHVKPRKPRKIRVPS
NFQN**n*ilkf*ikyfylifvititi*

Homology Contig-U05015-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U05015-1 (Contig-U05015-1Q) /CSM_Contig/Conti...  1072  0.0
Contig-U13099-1 (Contig-U13099-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U05389-1 (Contig-U05389-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U09670-1 (Contig-U09670-1Q) /CSM_Contig/Conti...    36  0.057
Contig-U06781-1 (Contig-U06781-1Q) /CSM_Contig/Conti...    36  0.057
Contig-U03792-1 (Contig-U03792-1Q) /CSM_Contig/Conti...    36  0.057
Contig-U02008-1 (Contig-U02008-1Q) /CSM_Contig/Conti...    36  0.057
Contig-U01624-1 (Contig-U01624-1Q) /CSM_Contig/Conti...    36  0.057
Contig-U13985-1 (Contig-U13985-1Q) /CSM_Contig/Conti...    34  0.22

Homology Contig-U05015-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(C92431) Dictyostelium discoideum slug cDNA, clone SSE538.        535   0.0    3
(AU072447) Dictyostelium discoideum slug cDNA, clone SSE538.      476   e-130  1
(DQ832717) Phytophthora sojae mitochondrion, complete genome.      38   0.011  6
(AC130677) Mus musculus chromosome 7, clone RP24-529F12, com...    52   0.035  1
(AC046145) Mus musculus 7 BAC RP23-306D24 (Roswell Park Canc...    52   0.035  1
(AZ287871) RPCI-23-156B1.TJ RPCI-23 Mus musculus genomic clo...    52   0.035  1
(EJ387368) 1092963830799 Global-Ocean-Sampling_GS-28-01-01-1...    52   0.035  1
(AC231109) Bos taurus clone CH240-491C15, WORKING DRAFT SEQU...    42   0.066  4
(BX537124) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    36   0.068  8
(EJ885458) 1093018414746 Global-Ocean-Sampling_GS-30-02-01-1...    38   0.11   2

Homology Contig-U05015-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC117075_8(AC117075|pid:none) Dictyostelium discoideum chromosom...    64   4e-09
AC117076_24(AC117076|pid:none) Dictyostelium discoideum chromoso...    59   2e-07
(Q5RJH2) RecName: Full=Multiple C2 and transmembrane domain-cont...    52   2e-05
AM437500_2(AM437500|pid:none) Vitis vinifera contig VV78X213371....    49   1e-04
FN357896_7(FN357896|pid:none) Schistosoma mansoni genome sequenc...    49   3e-04
AK300325_1(AK300325|pid:none) Homo sapiens cDNA FLJ57004 complet...    47   0.001
BC131527_1(BC131527|pid:none) Homo sapiens multiple C2 domains, ...    46   0.001
BC074133_1(BC074133|pid:none) Xenopus laevis Nedd4 protein, mRNA...    46   0.001
AJ000085_1(AJ000085|pid:none) Xenopus laevis mRNA for Nedd4 prot...    46   0.001
(Q6DN12) RecName: Full=Multiple C2 and transmembrane domain-cont...    46   0.001