Homology Contig-U04777-1 vs Protein

Query= Contig-U04777-1 (Contig-U04777-1Q) /CSM_Contig/Contig-U04777-1Q.Seq.d
         (731 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001614_3830(CP001614|pid:none) Teredinibacter turnerae T7901, ...    35   3.2
AE014188_417(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    33   9.2
AM398681_1484(AM398681|pid:none) Flavobacterium psychrophilum JI...    33   9.2

>CP001614_3830(CP001614|pid:none) Teredinibacter turnerae T7901,
           complete genome.
          Length = 897

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +3

Query: 138 PAKVNRKSASHXTLIKNTAMNTFQNIEEATDEEIYNRMYAARQREKMLKTSAFVQSFLGM 317
           P K+ +++ +   L K+   N FQ   EA D+E   R++ ARQ    L+   F   +  +
Sbjct: 600 PEKLMKQADAALYLAKSEGKNNFQLFNEALDKEAKKRVFMARQTRSALRHKRFFLEYQPL 659

Query: 318 AGQS 329
           A  S
Sbjct: 660 ANIS 663

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 637,532,264
Number of extensions: 9432347
Number of successful extensions: 32137
Number of sequences better than 10.0: 3
Number of HSP's gapped: 32131
Number of HSP's successfully gapped: 3
Length of query: 243
Length of database: 1,061,185,681
Length adjustment: 125
Effective length of query: 118
Effective length of database: 652,629,681
Effective search space: 77010302358
Effective search space used: 77010302358
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)




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