Dictyostelium discoideum cDNA Contig-U04450-1

Assembled

Chromosomal Location of Contig-U04450-1

Sequence Contig-U04450-1

CCACGCGTCC GGATAATACT TTACAATATT CCTCACCAAT TAATAAACGT
CAAGAACAAG AACAACAACA TATACCGTTT CAATTTACAA CTGAACAACA
ACAACAATTA CAGCAACAGC AACAACAACA ACAACAAAAT AAAACTAAAC
AACATCCAAT ACTTTTACAA CGTCAACAAC AACAAAAACA AAAACAACAA
CAACAACAAC AAATTCAACA AGAACAAATT GGTAATAATA ATAGTAATAA
TAATAATAAT ATTAATAATA ATAATAATAT AAATAATAAT TATAATAATG
TTAATGATTT AATGAATAAA TTTGAAATTG ATCAAAAACA ACATGATTCT
CAACAAAATC TTGTTGAAGA GAAAAGAACA CCTTCATTTC ATGAACATAA
TATCATTTTT AATTCATTTA ATTTTATTTG TTCAATAGTA TTGGATGGTT
CAAATATTAA ATCAACTGAA AAATATAAAG CAAAATTAAT CATTGGTTTT
TGTTTTACAA TTTTAAGTTT TATACCTTCT TGGATAATAT TTTTTTGGTT
ATCTGGTATT AATAAACCAG CAGTAATGGC AATAATTGCA ATGCCAATGT
CAATTTCAAG TTTAGTAATT TTAAAAAGAA CTGGTTCAAT TCATTATCCA
TGTCATATTT TATGTTTTAC ATTATGTTTT GCATTAACAA TTAATTCATA
TTATACTGGT GGTCATCAGA GTACGATTAG ATTGTTAATG AGTACAGTAC
CTATTATATC GGCATTGGTT TTAGGTAGAA AAGCATCGAT ACAATGGTCA
TTAATGGTTT TATCAATTTA TTTATTATTT TTTGTAGCCA ATTTGTATGG
ACATGAATAT GTTCAAGGTA TACCATCGAT TATAATTAGA AGTCATATGA
ATTTCATCAT TGATGTAACT ATAATCATTA TGACATTGAT TTTCACATTA
TGTTATCAAT ACTTTATAGA TGAAGCACAT AGAGAAACTA AATTAAAGAA
TGCACAATTA ACAATTGCAA AGGATGCTGC CATTGAGGCA TATCAAGCAC
GTCAAGAGTT TTTAGCGACA ATGAGTCATG AAATTCGTAC ACCATTGAAT
GGTTTAATTG GTATGGCAAC TTTGTTGAGA GATTCACATA ATCTACCACC
AGAGGAGAAG ACAATGGCAA AGGCTGTCAA ATCGTGTGGT GATATTCTAC
TAAGATTGGT TAATGATATT TTAGATCTTT CGAAATTGGA GGCCAATCAA
ATGGGTTTAG AACATATACC ATTTAGAATG AGAGAATTAA CTCAACAAAT
TTGTCATGTT TTGTCTGGTC AAGCTAATGA AAAGAATATT CATTTATCAT
GTGAGGTTTC CGATAAGATT CCTTCGATTT TACTTGGTGA CTCTGGCAGA
ATCTTACAAA TACTAATGAA TTTAACTGGT AATGCTTTGA AATTCACTCA
GAGTGGTTAT GTTAAAATCA TAATTGACCT CATCGAAGAG GAGTCCGAAT
TGGTGTCTTT GAAAAAGGGT GAATATAATA TATCATTTCG TGTAAAAGAT
ACCGGTATTG GTGTACCAGT TGAAAGTCAT CAAAAGATTT TCGAAGCCTT
TGTTCAGGCT GACCCCTCTG ATAGTAGAAA GTATGGTGGG TCAGGTTTGG
GACTTTATTT ATGTGCAAAG TTGGTACGTT TAATGAAGGG TGAAATAGGA
GTTTACAACA ATCCCGATTG TGATGGTTCT ACCTTTTGGT TCATTTTACC
TTTGGAGGAG GGTACCGACC AATCAATGCA ACAAATGAAC AATGGCGCAC
GTCATAAAGC TTTCCCTCAA GATTGTGTAA AAGTTTTAAT CGCTGAAGAT
AACATTATCA ATCAAAGAGT GGCCGTTAAA TTCTTGGAGA AAATTGGTAT
CAAGGCTGAA GTCGCTGGCA ATGGTAATGA GGTTTTGGAA ATATTAGAAA
GACAACATTA TGATCTCATA TTTATGGACT TTCAAATGCC AATACTCGAT
GGTTTAAGAT GCTCAAAAAC TATTAGAGAA TTTGAACAAA ATCATAAATG
GAATAGAATT TGTCCTTCCA TTTTCATTTG TGGTTTAACT GCCAATACAA
TGTCTACTGA TAAAAAGAGA TGCTTCGATC ATGGTATGAA TCATTTCATT
TCAAAACCAT TTCAACTTGA ACAACTTAGA TCTGCAATTG AAATGGCAAT
TGAACATAAA CAAAGAAATT TAATGAATTT AAATATTCGT AATTAATTTT
AT

Translated Amino Acid Sequence Contig-U04450-1

TRPDNTLQYSSPINKRQEQEQQHIPFQFTTEQQQQLQQQQQQQQQNKTKQHPILLQRQQQ
QKQKQQQQQQIQQEQIGNNNSNNNNNINNNNNINNNYNNVNDLMNKFEIDQKQHDSQQNL
VEEKRTPSFHEHNIIFNSFNFICSIVLDGSNIKSTEKYKAKLIIGFCFTILSFIPSWIIF
FWLSGINKPAVMAIIAMPMSISSLVILKRTGSIHYPCHILCFTLCFALTINSYYTGGHQS
TIRLLMSTVPIISALVLGRKASIQWSLMVLSIYLLFFVANLYGHEYVQGIPSIIIRSHMN
FIIDVTIIIMTLIFTLCYQYFIDEAHRETKLKNAQLTIAKDAAIEAYQARQEFLATMSHE
IRTPLNGLIGMATLLRDSHNLPPEEKTMAKAVKSCGDILLRLVNDILDLSKLEANQMGLE
HIPFRMRELTQQICHVLSGQANEKNIHLSCEVSDKIPSILLGDSGRILQILMNLTGNALK
FTQSGYVKIIIDLIEEESELVSLKKGEYNISFRVKDTGIGVPVESHQKIFEAFVQADPSD
SRKYGGSGLGLYLCAKLVRLMKGEIGVYNNPDCDGSTFWFILPLEEGTDQSMQQMNNGAR
HKAFPQDCVKVLIAEDNIINQRVAVKFLEKIGIKAEVAGNGNEVLEILERQHYDLIFMDF
QMPILDGLRCSKTIREFEQNHKWNRICPSIFICGLTANTMSTDKKRCFDHGMNHFISKPF
QLEQLRSAIEMAIEHKQRNLMNLNIRN*fy

Homology Contig-U04450-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U04450-1 (Contig-U04450-1Q) /CSM_Contig/Conti...  3790  0.0
Contig-U14332-1 (Contig-U14332-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U13531-1 (Contig-U13531-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U12507-1 (Contig-U12507-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U12020-1 (Contig-U12020-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U11293-1 (Contig-U11293-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U11247-1 (Contig-U11247-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U11030-1 (Contig-U11030-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U10933-1 (Contig-U10933-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U09796-1 (Contig-U09796-1Q) /CSM_Contig/Conti...    40  0.010

Homology Contig-U04450-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AY263399) Dictyostelium discoideum strain Ax2 sombrero SmbA...  3366   0.0    1
(AF362376) Dictyostelium discoideum histidine kinase DhkK (d...  3342   0.0    1
(C83936) Dictyostelium discoideum slug cDNA, clone SSA688.       1255   0.0    3
(CP000083) Colwellia psychrerythraea 34H, complete genome.         54   9e-05  2
(EA385110) Sequence 33934 from patent US 7314974.                  62   1e-04  1
(CP000383) Cytophaga hutchinsonii ATCC 33406, complete genome.     62   1e-04  1
(CP001252) Shewanella baltica OS223, complete genome.              56   0.006  1
(CR954246) Pseudoalteromonas haloplanktis str. TAC125 chromo...    54   0.024  1
(CP000749) Marinomonas sp. MWYL1, complete genome.                 54   0.024  1
(AF362373) Dictyostelium discoideum histidine kinase DhkL (d...    40   0.040  4

Homology Contig-U04450-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q86CZ2) RecName: Full=Hybrid signal transduction histidine kina...  1259   0.0
AE017180_2302(AE017180|pid:none) Geobacter sulfurreducens PCA, c...   281   1e-73
CP000859_981(CP000859|pid:none) Desulfococcus oleovorans Hxd3, c...   274   1e-71
AP007255_1110(AP007255|pid:none) Magnetospirillum magneticum AMB...   273   2e-71
BA000038_8(BA000038|pid:none) Vibrio vulnificus YJ016 DNA, chrom...   271   8e-71
AE016796_1099(AE016796|pid:none) Vibrio vulnificus CMCP6 chromos...   269   3e-70
CU234118_4446(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl...   268   5e-70
CP000494_3296(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl...   268   6e-70
CP000510_3145(CP000510|pid:none) Psychromonas ingrahamii 37, com...   267   1e-69
BA000045_718(BA000045|pid:none) Gloeobacter violaceus PCC 7421 D...   267   1e-69