Homology Contig-U03777-1 vs Protein
Query= Contig-U03777-1 (Contig-U03777-1Q) /CSM_Contig/Contig-U03777-1Q.Seq.d
(653 letters)
Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(O96552) RecName: Full=Charged multivesicular body protein 1; Al... 312 6e-84
DQ311345_1(DQ311345|pid:none) Bombyx mori chromatin modifying pr... 186 5e-46
AE017341_438(AE017341|pid:none) Cryptococcus neoformans var. neo... 181 1e-44
(Q5ZKX1) RecName: Full=Charged multivesicular body protein 1b; A... 177 2e-43
AK014091_1(AK014091|pid:none) Mus musculus 13 days embryo head c... 175 1e-42
(Q7LBR1) RecName: Full=Charged multivesicular body protein 1b; A... 174 2e-42
(Q99LU0) RecName: Full=Charged multivesicular body protein 1b-1;... 174 2e-42
AF281064_1(AF281064|pid:none) Homo sapiens CHMP1.5 mRNA, complet... 174 2e-42
BC168175_1(BC168175|pid:none) Rattus norvegicus chromatin modify... 174 2e-42
AE014296_3224(AE014296|pid:none) Drosophila melanogaster chromos... 173 5e-42
BT075842_1(BT075842|pid:none) Caligus rogercresseyi clone crog-e... 172 6e-42
BT074735_1(BT074735|pid:none) Osmerus mordax clone omor-rgc-501-... 172 8e-42
(Q7ZVB1) RecName: Full=Charged multivesicular body protein 1b; A... 172 8e-42
BT057167_1(BT057167|pid:none) Salmo salar clone ssal-rgb2-640-12... 170 4e-41
(Q6DF27) RecName: Full=Charged multivesicular body protein 1b; A... 169 7e-41
AK167614_1(AK167614|pid:none) Mus musculus 13 days pregnant adul... 169 7e-41
BT056837_1(BT056837|pid:none) Salmo salar clone ssal-eve-562-216... 169 7e-41
BT073648_1(BT073648|pid:none) Oncorhynchus mykiss clone omyk-evn... 167 2e-40
FM992692_262(FM992692|pid:none) Candida dubliniensis CD36 chromo... 166 7e-40
AK118350_1(AK118350|pid:none) Arabidopsis thaliana At1g17730 mRN... 165 1e-39
CR382139_212(CR382139|pid:none) Debaryomyces hansenii strain CBS... 164 2e-39
CR382129_389(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 164 3e-39
AY084868_1(AY084868|pid:none) Arabidopsis thaliana clone 119909 ... 163 4e-39
AY217740_1(AY217740|pid:none) Nicotiana benthamiana putative dev... 163 5e-39
BT007553_1(BT007553|pid:none) Synthetic construct Homo sapiens p... 162 6e-39
(Q5R605) RecName: Full=Charged multivesicular body protein 1a; A... 162 6e-39
EF082581_1(EF082581|pid:none) Picea sitchensis clone WS0297_J10 ... 162 6e-39
BC168427_1(BC168427|pid:none) Xenopus tropicalis cDNA clone MGC:... 162 8e-39
AM494971_438(AM494971|pid:none) Leishmania braziliensis chromoso... 162 8e-39
(Q6NUD8) RecName: Full=Charged multivesicular body protein 1a; A... 162 8e-39
BT074798_1(BT074798|pid:none) Osmerus mordax clone omor-eva-505-... 161 1e-38
(Q6PHF0) RecName: Full=Charged multivesicular body protein 1a; A... 161 1e-38
AM502253_452(AM502253|pid:none) Leishmania infantum chromosome 35. 160 4e-38
BT051673_1(BT051673|pid:none) Medicago truncatula clone MTYF5_F6... 159 5e-38
BC067665_1(BC067665|pid:none) Danio rerio chromatin modifying pr... 158 1e-37
EU096087_1(EU096087|pid:none) Hordeum vulgare subsp. vulgare SAL... 156 6e-37
AK061733_1(AK061733|pid:none) Oryza sativa Japonica Group cDNA c... 156 6e-37
AY243475_1(AY243475|pid:none) Zea mays superal1 (Sal1) mRNA, com... 155 1e-36
CP001576_212(CP001576|pid:none) Micromonas sp. RCC299 chromosome... 154 3e-36
EU961781_1(EU961781|pid:none) Zea mays clone 238223 charged mult... 154 3e-36
AM931535_1(AM931535|pid:none) Hordeum vulgare partial sal1 gene ... 152 6e-36
AF106583_3(AF106583|pid:none) Caenorhabditis elegans cosmid F23C... 152 8e-36
AM931536_1(AM931536|pid:none) Hordeum vulgare subsp. vulgare par... 151 1e-35
FN392319_936(FN392319|pid:none) Pichia pastoris GS115 chromosome... 150 4e-35
FN357440_32(FN357440|pid:none) Schistosoma mansoni genome sequen... 149 5e-35
DQ480534_1(DQ480534|pid:none) Schistosoma mansoni vacuolar assem... 147 2e-34
(P69771) RecName: Full=Vacuolar protein-sorting-associated prote... 138 2e-31
S78566(S78566)FTI1 protein - yeast (Saccharomyces cerevisiae) 138 2e-31
CR380958_129(CR380958|pid:none) Candida glabrata strain CBS138 c... 137 3e-31
AE016819_301(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 135 1e-30
CR382126_920(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 134 2e-30
CU928176_159(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 134 3e-30
CU928169_660(CU928169|pid:none) Kluyveromyces thermotolerans str... 133 4e-30
CT005270_227(CT005270|pid:none) Leishmania major strain Friedlin... 132 7e-30
AY223428_1(AY223428|pid:none) Schistosoma japonicum clone ZZZ394... 132 1e-29
AY813638_1(AY813638|pid:none) Schistosoma japonicum SJCHGC01919 ... 131 2e-29
FN319193_1(FN319193|pid:none) Schistosoma japonicum isolate Anhu... 131 2e-29
AK302055_1(AK302055|pid:none) Homo sapiens cDNA FLJ57657 complet... 122 1e-26
BT046538_1(BT046538|pid:none) Salmo salar clone ssal-eve-552-214... 109 6e-23
AY811600_1(AY811600|pid:none) Schistosoma japonicum SJCHGC02210 ... 107 4e-22
AY814098_1(AY814098|pid:none) Schistosoma japonicum SJCHGC06933 ... 103 4e-21
AY223258_1(AY223258|pid:none) Schistosoma japonicum clone ZZD443... 100 6e-20
AE014297_4075(AE014297|pid:none) Drosophila melanogaster chromos... 84 5e-15
AJ628544_1(AJ628544|pid:none) Arabidopsis thaliana partial At2g0... 81 2e-14
CR940347_795(CR940347|pid:none) Theileria annulata strain Ankara... 81 3e-14
BT057370_1(BT057370|pid:none) Salmo salar clone ssal-evd-571-229... 80 4e-14
D84478(D84478)hypothetical protein At2g06530 [imported] - Arabid... 80 7e-14
(Q701F9) RecName: Full=Vacuolar protein sorting-associated prote... 80 7e-14
AY088685_1(AY088685|pid:none) Arabidopsis thaliana clone 91878 m... 80 7e-14
AJ628449_1(AJ628449|pid:none) Arabidopsis thaliana partial At2g0... 80 7e-14
BT073784_1(BT073784|pid:none) Oncorhynchus mykiss clone omyk-evo... 80 7e-14
AJ628535_1(AJ628535|pid:none) Arabidopsis thaliana partial At2g0... 80 7e-14
BT078425_1(BT078425|pid:none) Lepeophtheirus salmonis Pacific fo... 79 9e-14
BT078268_1(BT078268|pid:none) Lepeophtheirus salmonis Pacific fo... 79 1e-13
AM425689_1(AM425689|pid:none) Vitis vinifera contig VV78X267041.... 79 2e-13
BT075992_1(BT075992|pid:none) Caligus rogercresseyi clone crog-e... 77 3e-13
AY890758_1(AY890758|pid:none) Synthetic construct Homo sapiens c... 76 8e-13
(Q9DB34) RecName: Full=Charged multivesicular body protein 2a; A... 76 8e-13
BT065136_1(BT065136|pid:none) Zea mays full-length cDNA clone ZM... 76 1e-12
(Q7ZW25) RecName: Full=Charged multivesicular body protein 2a; A... 76 1e-12
BT081330_1(BT081330|pid:none) Caligus clemensi clone ccle-evs-50... 76 1e-12
BC152230_1(BC152230|pid:none) Danio rerio putative breast adenoc... 75 1e-12
BC102258_1(BC102258|pid:none) Bos taurus chromatin modifying pro... 75 2e-12
(Q6DFS6) RecName: Full=Charged multivesicular body protein 2a; A... 75 2e-12
BT076646_1(BT076646|pid:none) Caligus rogercresseyi clone crog-e... 75 2e-12
BT081097_1(BT081097|pid:none) Caligus clemensi clone ccle-evs-51... 75 2e-12
(Q5ZHN1) RecName: Full=Charged multivesicular body protein 2a; A... 72 2e-11
CR954212_192(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 71 3e-11
AY811506_1(AY811506|pid:none) Schistosoma japonicum clone SJCHGC... 69 9e-11
AK339864_1(AK339864|pid:none) Acyrthosiphon pisum ACYPI008820 mR... 69 2e-10
AY811527_1(AY811527|pid:none) Schistosoma japonicum clone SJCHGC... 66 1e-09
CP001574_554(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 65 2e-09
FN392321_1191(FN392321|pid:none) Pichia pastoris GS115 chromosom... 65 2e-09
Z81029_5(Z81029|pid:none) Caenorhabditis elegans Cosmid C01A2, c... 64 3e-09
CR382137_536(CR382137|pid:none) Debaryomyces hansenii strain CBS... 61 3e-08
AY814107_1(AY814107|pid:none) Schistosoma japonicum SJCHGC01479 ... 59 1e-07
FN315163_1(FN315163|pid:none) Schistosoma japonicum isolate Anhu... 59 1e-07
AM269949_13(AM269949|pid:none) Aspergillus niger contig An01c002... 57 4e-07
FN315164_1(FN315164|pid:none) Schistosoma japonicum isolate Anhu... 57 5e-07
FN320300_1(FN320300|pid:none) Schistosoma japonicum isolate Anhu... 57 5e-07
EU977074_1(EU977074|pid:none) Zea mays clone 998291 hypothetical... 48 3e-04
BC010000_1(BC010000|pid:none) Homo sapiens chromatin modifying p... 48 3e-04
T18795(T18795)hypothetical protein C01A2.4 - Caenorhabditis eleg... 47 6e-04
EU637017_24(EU637017|pid:none) Adineta vaga glycoprotein gene, p... 46 0.001
CR380958_67(CR380958|pid:none) Candida glabrata strain CBS138 ch... 45 0.002
FN320302_1(FN320302|pid:none) Schistosoma japonicum isolate Anhu... 44 0.003
(P36129) RecName: Full=Putative uncharacterized protein OPI8; &... 44 0.004
BT075857_1(BT075857|pid:none) Caligus rogercresseyi clone crog-e... 44 0.005
(P36095) RecName: Full=Vacuolar protein-sorting-associated prote... 44 0.005
BT077464_1(BT077464|pid:none) Lepeophtheirus salmonis Pacific fo... 42 0.012
AX885468_1(AX885468|pid:none) Sequence 1331 from Patent EP1033401. 41 0.036
AX885470_1(AX885470|pid:none) Sequence 1333 from Patent EP1033401. 41 0.036
BT075788_1(BT075788|pid:none) Caligus rogercresseyi clone crog-e... 39 0.10
FN392319_331(FN392319|pid:none) Pichia pastoris GS115 chromosome... 38 0.30
CP001359_73(CP001359|pid:none) Anaeromyxobacter dehalogenans 2CP... 36 0.88
CP001131_63(CP001131|pid:none) Anaeromyxobacter sp. K, complete ... 36 0.88
AM295250_2201(AM295250|pid:none) Staphylococcus carnosus subsp. ... 36 0.88
CP000612_1015(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 35 1.5
AE017356_184(AE017356|pid:none) Cryptococcus neoformans var. neo... 35 2.0
(Q6CJL0) RecName: Full=Vacuolar-sorting protein SNF7; AltName: F... 35 2.0
AF302466_2(AF302466|pid:none) Pasteurella multocida P1234 region... 34 3.3
FJ218593_1(FJ218593|pid:none) Drosophila melanogaster strain MW3... 34 3.3
CP000496_7(CP000496|pid:none) Pichia stipitis CBS 6054 chromosom... 34 3.3
CP000283_2721(CP000283|pid:none) Rhodopseudomonas palustris BisB... 34 3.3
FJ218599_1(FJ218599|pid:none) Drosophila melanogaster strain MW6... 34 3.3
FJ218580_1(FJ218580|pid:none) Drosophila melanogaster strain NC3... 34 4.3
AK300017_1(AK300017|pid:none) Homo sapiens cDNA FLJ59418 complet... 33 5.7
CP000377_1270(CP000377|pid:none) Silicibacter sp. TM1040, comple... 33 5.7
CP001110_2658(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 33 5.7
FJ218597_1(FJ218597|pid:none) Drosophila melanogaster strain MW5... 33 7.4
FJ218598_1(FJ218598|pid:none) Drosophila melanogaster strain MW6... 33 7.4
FJ218577_1(FJ218577|pid:none) Drosophila melanogaster strain MW2... 33 7.4
FJ218592_1(FJ218592|pid:none) Drosophila melanogaster strain NC3... 33 7.4
(Q09822) RecName: Full=Cell division control protein 15; &CU329... 33 7.4
AY129432_1(AY129432|pid:none) Drosophila melanogaster GM04379 fu... 33 7.4
AE015927_1542(AE015927|pid:none) Clostridium tetani E88, complet... 33 7.4
AM270325_12(AM270325|pid:none) Aspergillus niger contig An14c018... 33 9.7
>(O96552) RecName: Full=Charged multivesicular body protein 1;
AltName: Full=Vacuolar protein-sorting-associated
protein 46; AltName: Full=Developmental gene 1118
protein; &AF081802_1(AF081802|pid:none)
Length = 192
Score = 312 bits (799), Expect = 6e-84
Identities = 167/188 (88%), Positives = 167/188 (88%)
Frame = +3
Query: 54 MENQLFQLKFTXXXXXXXXXXXXXXXXXXXXXLKKAIEQGNMDGARIYAQNAIREKNQSL 233
MENQLFQLKFT LKKAIEQGNMDGARIYAQNAIREKNQSL
Sbjct: 1 MENQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSL 60
Query: 234 NYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFE 413
NYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFE
Sbjct: 61 NYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFE 120
Query: 414 DLDVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQMGSAPSEKVQQGETDE 593
DLDVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQMGSAPSEKVQQGETDE
Sbjct: 121 DLDVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQMGSAPSEKVQQGETDE 180
Query: 594 LTERLNRL 617
LTERLNRL
Sbjct: 181 LTERLNRL 188
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 696,917,737
Number of extensions: 10899726
Number of successful extensions: 32751
Number of sequences better than 10.0: 137
Number of HSP's gapped: 32661
Number of HSP's successfully gapped: 137
Length of query: 217
Length of database: 1,061,185,681
Length adjustment: 123
Effective length of query: 94
Effective length of database: 659,166,577
Effective search space: 61961658238
Effective search space used: 61961658238
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
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