Dictyostelium discoideum cDNA Contig-U02699-1

Assembled

Chromosomal Location of Contig-U02699-1

Sequence Contig-U02699-1

CAACCAGAGA TGGATATAAT TAAAGAGTTT ATAGAGAATG AAGATTTTAA
ATATGTTAGA ATTTTAGGGG CAATCTATTT AAGATTGGTT GGCAAACCAG
TGGATATCTA TAATCAATTG GATCCATTAT ATAAAGATTT TAGAGCATTA
AGAAGAAAAA CTGATATGGG TTCAACAAAG GTTTTCGTCG ATCAATTCAT
TGAGGAGTTA CTTACTACTA ATTACTCTTG TGATATTGCA TTACCTCATA
TACCTTCAAG AGCAAATTTA ATTCAACAAT CTTTACTCAA AGAAAGAGAA
TCACCTCTAT TGGCTTTGGG TTTATTAGAT TTAAAACAAA TTGAAAAGGA
GGAATATGAT AAAATTTTAA AATTAAAATC AAAATCGACA ACAACATCAT
CGTCATCATC ATCCATCACC ACCACCACCA CCACCACCAC CATTGAAAAT
GAAAATGAAA ATGAAAAACA TAAAGAAAAA CATAAAGAAA ANCATAAAGA
AAATGAAANC GAAAATGAAA ATAAAAGATA TAAAGAAAAA GATAATAAAG
ATGGGGAAAA GGAAAGATAC ATAGATAGAG ATAAGTACAG AGATAGAGAT
AGAGATAGTT ACAGAGATAG AGATAATTAC AAATATGATG ACAATGATAG
AGATAGATCC ACAAAATATC ATAAAGACTC CAATCGAGAT AGGGATAGAG
ATAGATATAG AGACATAGAT AGAGAACCTA AAAGGGATGA ATACTACAGA
ATGGATAGAG ATGACCGATA TAGAGATAGC GATAGCTATA GGGATAGGGA
TAGGTATAGA AACAGGGATA GAGAAAGAGA TAGGGAAAGA GAAGGTGAAA
GAGATAGAAA TTATAGAGAT GAATATGATA GATATAAAAG TAAAGATAGA
TATGATAATG AAGATGATTT CAACAATAGA AATAAATCAA TTAGGGATAG
AAATGGATAT AAAAGAGATT ATAGTGATAT TTCTTCTCAA AATGATAAAA
AACTATCGTC ACCATCAACA TCAGACAATG AAGAAGGATC AATTTCAACA
AGTGTAAAAA AGAAAAAAGA TATCTCAAAG TATGAAAAAC AACAAACTAC
GACAGCCAAT NATAATAATG TACCCAANAA AAAACAGAAA TNAACAAAGA
ANAATTAAGA GCAAAATTGG TTTAAACCAT NAAATAATTT NAAATTT

Translated Amino Acid Sequence Contig-U02699-1

QPEMDIIKEFIENEDFKYVRILGAIYLRLVGKPVDIYNQLDPLYKDFRALRRKTDMGSTK
VFVDQFIEELLTTNYSCDIALPHIPSRANLIQQSLLKERESPLLALGLLDLKQIEKEEYD
KILKLKSKSTTTSSSSSSITTTTTTTTIENENENEKHKEKHKEXHKENEXENENKRYKEK
DNKDGEKERYIDRDKYRDRDRDSYRDRDNYKYDDNDRDRSTKYHKDSNRDRDRDRYRDID
REPKRDEYYRMDRDDRYRDSDSYRDRDRYRNRDRERDREREGERDRNYRDEYDRYKSKDR
YDNEDDFNNRNKSIRDRNGYKRDYSDISSQNDKKLSSPSTSDNEEGSISTSVKKKKDISK
YEKQQTTTANXNNVPXKKQKXTKXN*eqnwfkpxnnxkf

Homology Contig-U02699-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U02699-1 (Contig-U02699-1Q) /CSM_Contig/Conti...   654  0.0
Contig-U12190-1 (Contig-U12190-1Q) /CSM_Contig/Conti...    52  1e-06
Contig-U13351-1 (Contig-U13351-1Q) /CSM_Contig/Conti...    50  6e-06
Contig-U14399-1 (Contig-U14399-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U11376-1 (Contig-U11376-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U07546-1 (Contig-U07546-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U01481-1 (Contig-U01481-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U00078-1 (Contig-U00078-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U14875-1 (Contig-U14875-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14691-1 (Contig-U14691-1Q) /CSM_Contig/Conti...    42  0.001

Homology Contig-U02699-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ388586) Dictyostelium discoideum cDNA clone:dds6e09, 5' e...   650   0.0    2
(BJ399509) Dictyostelium discoideum cDNA clone:dds6e09, 3' e...   272   e-154  4
(BJ343011) Dictyostelium discoideum cDNA clone:dda15f23, 3' ...   272   e-107  4
(FJ816237) Daucus carota clone GSSR-128 microsatellite seque...    52   0.058  1
(AL354701) Human DNA sequence from clone RP11-785H23 on chro...    52   0.058  1
(EK139853) 1095454078953 Global-Ocean-Sampling_GS-31-01-01-1...    52   0.058  1
(CO047897) Lr_AT1CF_29D08_SKplus Earthworm Atrazine Exposure...    52   0.058  1
(AC142071) Rattus norvegicus clone CH230-82F20, *** SEQUENCI...    44   0.070  2
(AC122657) Rattus norvegicus clone CH230-23G10, *** SEQUENCI...    44   0.071  2
(AP007166) Aspergillus oryzae RIB40 DNA, SC113.                    50   0.23   1

Homology Contig-U02699-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC116986_114(AC116986|pid:none) Dictyostelium discoideum chromos...   404   e-111
AC147963_19(AC147963|pid:none) Medicago truncatula chromosome 1 ...   113   2e-23
AK228762_1(AK228762|pid:none) Arabidopsis thaliana mRNA for hypo...   111   4e-23
BT085289_1(BT085289|pid:none) Zea mays full-length cDNA clone ZM...   110   8e-23
AP005909_2(AP005909|pid:none) Oryza sativa Japonica Group genomi...   108   4e-22
CR954201_383(CR954201|pid:none) Ostreococcus tauri strain OTTH05...   103   9e-21
(Q0P5I6) RecName: Full=Pre-mRNA-splicing factor 38A;  &(Q5RDD2) ...   101   6e-20
(Q4FK66) RecName: Full=Pre-mRNA-splicing factor 38A;  &AK169741_...    99   3e-19
AK027842_1(AK027842|pid:none) Homo sapiens cDNA FLJ14936 fis, cl...    99   4e-19
AE013599_818(AE013599|pid:none) Drosophila melanogaster chromoso...    98   5e-19