Homology Contig-U02469-1 vs DNA
Query= Contig-U02469-1 (Contig-U02469-1Q) /CSM_Contig/Contig-U02469-1Q.Seq.d
(1631 letters)
Database: ddbj_A
124,079,491 sequences; 117,728,717,442 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU060190) Dictyostelium discoideum slug cDNA, clone SLA542. 357 0.0 7
(BJ324142) Dictyostelium discoideum cDNA clone:dda5c02, 5' e... 460 0.0 3
(BJ341049) Dictyostelium discoideum cDNA clone:dda5c02, 3' e... 438 0.0 7
(C90820) Dictyostelium discoideum slug cDNA, clone SSJ185. 648 0.0 4
(AU038049) Dictyostelium discoideum slug cDNA, clone SSH203. 359 0.0 4
(BJ324967) Dictyostelium discoideum cDNA clone:dda8n19, 5' e... 531 e-159 2
(BJ341960) Dictyostelium discoideum cDNA clone:dda8n19, 3' e... 92 4e-45 5
(GR582138) CBZZ1952.b1 CBZZ Dictyostelium purpureum 18 hr st... 94 1e-33 3
(GR582139) CBZZ1952.g1 CBZZ Dictyostelium purpureum 18 hr st... 92 6e-29 3
(FN357326) Schistosoma mansoni genome sequence supercontig S... 40 0.045 2
(FV536039) Modified Microbial Nucleic Acid. 50 0.32 1
(FV536038) Modified Microbial Nucleic Acid. 50 0.32 1
(AR923385) Sequence 4022 from patent US 7090973. 50 0.32 1
(GE751202) MUS14-A04.x1d-t SHGC-MUS Mytilus californianus cD... 50 0.32 1
(FQ312004) Bacteroides fragilis 638R genome. 50 0.32 1
(CR626927) Bacteroides fragilis NCTC 9343, complete genome. 50 0.32 1
(AP006841) Bacteroides fragilis YCH46 DNA, complete genome. 50 0.32 1
(AC238375) Solanum tuberosum chromosome 5 clone RH188A15, **... 40 0.57 5
(CC852882) NDL.52M7.SP6 Notre Dame Liverpool Aedes aegypti g... 48 1.2 1
(EL354425) CCEM11088.b1_P12.ab1 CCE(LMS) endive Cichorium en... 48 1.2 1
(EH706268) CCIS556.b1_H19.ab1 CCI(LMS) chicory Cichorium int... 48 1.2 1
(EH696194) CCIM8005.b1_J10.ab1 CCI(LMS) chicory Cichorium in... 48 1.2 1
(EH693511) CCIM5526.b1_L13.ab1 CCI(LMS) chicory Cichorium in... 48 1.2 1
(EH691439) CCIM3619.b1_F17.ab1 CCI(LMS) chicory Cichorium in... 48 1.2 1
(EH688451) CCIM13115.b1_E15.ab1 CCI(LMS) chicory Cichorium i... 48 1.2 1
(EH686984) CCIM11773.b1_I16.ab1 CCI(LMS) chicory Cichorium i... 48 1.2 1
(EH684443) CCIL9135.b1_N04.ab1 CCI(LMS) chicory Cichorium in... 48 1.2 1
(DW097338) CLPY8361.b1_B04.ab1 CLP(XYZ) lettuce perennis Lac... 48 1.2 1
(DW095186) CLPY6294.b1_L13.ab1 CLP(XYZ) lettuce perennis Lac... 48 1.2 1
(DW093660) CLPY4881.b1_A22.ab1 CLP(XYZ) lettuce perennis Lac... 48 1.2 1
(DW090126) CLPY14168.b1_P14.ab1 CLP(XYZ) lettuce perennis La... 48 1.2 1
(FL678739) CIRNG003D06 CiRN Cichorium intybus cDNA 3', mRNA ... 48 1.2 1
(FL674950) CIREL006A06 CiRE Cichorium intybus cDNA 3', mRNA ... 48 1.2 1
(BU905956) AGENCOURT_10456406 NICHD_XGC_Emb1 Xenopus laevis ... 42 1.5 3
(FP102920) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 2.3 3
(CU928313) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.5 2
(CU633691) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.5 2
(AC235234) Glycine max strain Williams 82 clone GM_WBb0028B2... 36 3.9 8
(AM487276) Vitis vinifera contig VV78X159983.55, whole genom... 36 4.2 6
(AB083077) Oryzias latipes DNA, globin gene cluster region. 46 4.9 1
(AC158152) Mus musculus chromosome 5, clone RP23-102E11, com... 46 4.9 1
(AM465708) Vitis vinifera contig VV78X261323.6, whole genome... 46 4.9 1
(AC157160) Bos taurus clone CH240-65C9, WORKING DRAFT SEQUEN... 46 4.9 1
(AC102740) Mus musculus clone RP24-338E4, WORKING DRAFT SEQU... 46 4.9 1
(AC175867) Strongylocentrotus purpuratus clone R3-15G5, WORK... 46 4.9 1
(AC172918) Bos taurus clone CH240-310B15, WORKING DRAFT SEQU... 46 4.9 1
(AZ340317) 1M0072N14F Mouse 10kb plasmid UUGC1M library Mus ... 46 4.9 1
(ER549636) 1093016212201 Global-Ocean-Sampling_GS-35-01-01-1... 46 4.9 1
(EJ973104) 1093022096967 Global-Ocean-Sampling_GS-30-02-01-1... 46 4.9 1
(DX431067) BE1100_K06_F IASMA L1 HindIII BAC library Vitis v... 46 4.9 1
(DH426232) Oryzias latipes Fosmid clone:GOLWFno843_h15, forw... 46 4.9 1
(CT560453) A BAC library has been constructed from cultivar ... 46 4.9 1
(CC210500) CH261-185K8_RM1.1 CH261 Gallus gallus genomic clo... 46 4.9 1
(CC210029) CH261-185B9_Sp6.2 CH261 Gallus gallus genomic clo... 46 4.9 1
(DV893783) LB02728.CR_E11 GC_BGC-27 Bos taurus cDNA clone IM... 46 4.9 1
(DV892033) LB02722.CR_F07 GC_BGC-27 Bos taurus cDNA clone IM... 46 4.9 1
(CP002122) Prevotella melaninogenica ATCC 25845 chromosome I... 46 4.9 1
(CX256311) 1309244 NCCCWA 02RT Oncorhynchus mykiss cDNA clon... 40 5.2 2
(EK373091) 1095469427226 Global-Ocean-Sampling_GS-31-01-01-1... 40 6.9 2
(EK367180) 1095469402452 Global-Ocean-Sampling_GS-31-01-01-1... 40 7.8 2
(DB532400) Homo sapiens hippocampus cDNA, RIKEN full-length ... 38 9.8 2
>(AU060190) Dictyostelium discoideum slug cDNA, clone SLA542.
Length = 663
Score = 357 bits (180), Expect(7) = 0.0
Identities = 180/180 (100%)
Strand = Plus / Minus
Query: 901 acatttttagcaggagcacctggatcaggtaaaggtacgaatacagaagttttaatgaat 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 acatttttagcaggagcacctggatcaggtaaaggtacgaatacagaagttttaatgaat 604
Query: 961 gcattaggagttaatgaagaaccaattgtgatgagctcattattgaattcaccagaatgt 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gcattaggagttaatgaagaaccaattgtgatgagctcattattgaattcaccagaatgt 544
Query: 1021 attgaaataaagaaacaaggtggattggttaatgataaagttgtattagaacttttattg 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 attgaaataaagaaacaaggtggattggttaatgataaagttgtattagaacttttattg 484
Score = 353 bits (178), Expect(7) = 0.0
Identities = 195/201 (97%)
Strand = Plus / Minus
Query: 1359 acttcccacttttggggattagagatcccgatatcgccccaaatgcctctaaaaaacgtt 1418
|||| |||||||| | |||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 212 acttaccacttttagagattagagataccgatatcgacccaaatgcctctaaaaaacgtt 153
Query: 1419 ataccttgtatcaagaacaattcaatcatttaaaatctttagaagataaattcgattttg 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 152 ataccttgtatcaagaacaattcaatcatttaaaatctttagaagataaattcgantttg 93
Query: 1479 atttaattgatgcaaatggtactttaaaagatgtacaaaatacaattaaaacctcttatg 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 atttaattgatgcaaatggtactttaaaagatgtacaaaatacaattaaaacctcttatg 33
Query: 1539 ctaaattacaaccacaccttt 1559
|||||||||||||||||||||
Sbjct: 32 ctaaattacaaccacaccttt 12
Score = 170 bits (86), Expect(7) = 0.0
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 1119 caaggtccaaagaaaggtgttatcatcgatggtttcccacgttctgccaaacaagttaaa 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 caaggtccaaagaaaggtgttatcatcgatggtttcccacgttctgccaaacaagttaaa 388
Query: 1179 tttgtagaattactctttgataaact 1204
||||||||||||||||||||||||||
Sbjct: 387 tttgtagaattactctttgataaact 362
Score = 103 bits (52), Expect(7) = 0.0
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 1205 tagttaaaattagaaaaacaattaatccaaacgcttctttaccacgttttag 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tagttaaaattagaaaaacaattaatccaaacgcttctttaccacgttttag 311
Score = 46.1 bits (23), Expect(7) = 0.0
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1258 aattagtgttttacatgtaagtg 1280
|||||||||||||||||||||||
Sbjct: 310 aattagtgttttacatgtaagtg 288
Score = 44.1 bits (22), Expect(7) = 0.0
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1097 cccgattatttatgtgaaaatc 1118
||||||||||||||||||||||
Sbjct: 468 cccgattatttatgtgaaaatc 447
Score = 26.3 bits (13), Expect(7) = 0.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 1286 agaatctgtaaag 1298
|||||||||||||
Sbjct: 283 agaatctgtaaag 271
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 124079491
Number of Hits to DB: 1,756,701,827
Number of extensions: 104152255
Number of successful extensions: 8159527
Number of sequences better than 10.0: 62
Length of query: 1631
Length of database: 117,728,717,442
Length adjustment: 24
Effective length of query: 1607
Effective length of database: 114,750,809,658
Effective search space: 184404551120406
Effective search space used: 184404551120406
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home