Dictyostelium discoideum cDNA Contig-U02425-1

Assembled

Chromosomal Location of Contig-U02425-1

Sequence Contig-U02425-1

AATTTGGAAG ATCATTTAAT CAACCATTAA AGGCAGGAGG TGTACCACAA
TCAATTAATA AGATTGTATT TGGTGAACAT TTTAATCAAC CTTTATCATT
GAAAGAATGT GATAATTTGG AATACATTGA ATTTGGTGAT GATTTCAATC
AACCATTGGG AGAGTTACCA CAATCATTGA CTTTTTTAGA TCTTGGTAAT
GAATCATTCA ATCAACCATT GAAAGCAAAT ACTTTACCAA AGAATATTAT
TCATTTAAAG TTTTCAGCAT CATTTAATCA TCCAATTTGT TCTTTACCAT
TATCATCATC ATCATCGTCA TCATCGTTTA TAAATTATTT ACCACCATCA
TTAACACATT TAGATATGGG CGAAAGTTTT AATCAACCAA TACCAAAGAA
TTGTTTACCA GTTACATTAA AGTTTTTAAG GTTAGGATTT CATTTCAATC
AACCATTGGT ATCAAAGAAA TGTATTCCAC CAAATTTAGA AACATTGATA
TTTGGTCAAC TATTTAACCA AAAAATTAAA AAAGGTTATT TACCATCATC
TTTATTGACA TTGGAATTTG GGAGTAGATT CAGTCAATCC ATTAAAAAGG
GCACACTCCC ACCAAATCTT CAATGGTTAC GTTTTGGTGA AGGGTTTCAA
GGATCGCTTG AACAGGGTTC TATGCCTTTG AAATTGGTTG GTCTAACTTT
GAATTTGAAT TTAAAGAAAT GTCAAAAGGG TTGTTTACCA CCATCATTGA
CTTCACTACA TTTATTAGGT TGCAATAAAC AACGTTTACC AATTGGTTTA
GTTCCAACAT CTGTGACTTG TTTAACATTG GGTGAATTCT ATAATGAGGA
GTTGTTACCA AATGCTATAC CATCAAGTGT GAAAAGTTTA GTATTAGGCT
ATAGATTCAA TCAACCAATT GAACCAAATG CAATACCTTC AAGTGTTGAA
ACCCTATCAA TTGGTGAATG TTTTAATCAA CCAATTGGTA ATGGTCTTCC
AAAATCATTA ACTACTCTAA CTTTAAAATG TAAATACTAT TTCCATCGTT
TCTCAAATGA TAACTTACCA ACTTCTGTAA ATACTTTATA CTATACTGAT
GATAAGATTT ATGATGTTTT AAATTTAAAT GATTTCACTG AAACTCATTC
AAATTTAAAA GTTATTAAAC TTAATTAAAA AAATAAATAA ATAAACAATT
GTTTAATTAA TTTAAAACTT TTTTTTTTAA AAAAAAAAAA AAGATATTTG
AAAA

Translated Amino Acid Sequence Contig-U02425-1

FGRSFNQPLKAGGVPQSINKIVFGEHFNQPLSLKECDNLEYIEFGDDFNQPLGELPQSLT
FLDLGNESFNQPLKANTLPKNIIHLKFSASFNHPICSLPLSSSSSSSSFINYLPPSLTHL
DMGESFNQPIPKNCLPVTLKFLRLGFHFNQPLVSKKCIPPNLETLIFGQLFNQKIKKGYL
PSSLLTLEFGSRFSQSIKKGTLPPNLQWLRFGEGFQGSLEQGSMPLKLVGLTLNLNLKKC
QKGCLPPSLTSLHLLGCNKQRLPIGLVPTSVTCLTLGEFYNEELLPNAIPSSVKSLVLGY
RFNQPIEPNAIPSSVETLSIGECFNQPIGNGLPKSLTTLTLKCKYYFHRFSNDNLPTSVN
TLYYTDDKIYDVLNLNDFTETHSNLKVIKLN*knk*innclinlklfflkkkkrylk

Homology Contig-U02425-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U02425-1 (Contig-U02425-1Q) /CSM_Contig/Conti...  1221  0.0
Contig-U01810-1 (Contig-U01810-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U14848-1 (Contig-U14848-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11882-1 (Contig-U11882-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11731-1 (Contig-U11731-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U13627-1 (Contig-U13627-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U12548-1 (Contig-U12548-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U11820-1 (Contig-U11820-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U06917-1 (Contig-U06917-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U05489-1 (Contig-U05489-1Q) /CSM_Contig/Conti...    38  0.022

Homology Contig-U02425-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ340726) Dictyostelium discoideum cDNA clone:dda3e18, 3' e...  1144   0.0    1
(AU039932) Dictyostelium discoideum slug cDNA, clone SLG774.     1068   0.0    1
(AU061958) Dictyostelium discoideum slug cDNA, clone SLG774.      515   0.0    3
(AU053489) Dictyostelium discoideum slug cDNA, clone SLI754.      611   e-170  1
(GR578508) CBZY1335.b1 CBZY Dictyostelium purpureum 18 hr st...    48   8e-05  2
(EK088006) 1092961175971 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.001  3
(BJ413300) Dictyostelium discoideum cDNA clone:ddv15b06, 5' ...    40   0.015  2
(BJ327297) Dictyostelium discoideum cDNA clone:dda19n20, 5' ...    40   0.015  2
(EK900705) 1093018169143 Global-Ocean-Sampling_GS-33-01-01-1...    36   0.041  4
(EJ096077) 1095462062213 Global-Ocean-Sampling_GS-26-01-01-1...    36   0.17   3

Homology Contig-U02425-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q5UPD4) RecName: Full=Putative F-box and FNIP repeat-containing...   164   6e-39
AC116305_136(AC116305|pid:none) Dictyostelium discoideum chromos...   152   2e-35
AC116984_17(AC116984|pid:none) Dictyostelium discoideum chromoso...   138   4e-31
AC116960_34(AC116960|pid:none) Dictyostelium discoideum chromoso...   135   3e-30
AC117176_63(AC117176|pid:none) Dictyostelium discoideum chromoso...   134   7e-30
AC117267_6(AC117267|pid:none) Dictyostelium discoideum chromosom...   127   1e-27
(Q54JC0) RecName: Full=Calmodulin-binding protein CmbB; AltName:...   126   1e-27
AC116984_119(AC116984|pid:none) Dictyostelium discoideum chromos...   126   2e-27
AC116960_62(AC116960|pid:none) Dictyostelium discoideum chromoso...   125   3e-27
(Q5UQL2) RecName: Full=Putative F-box and FNIP repeat-containing...   124   5e-27