Dictyostelium discoideum cDNA Contig-U01623-1

Assembled

Chromosomal Location of Contig-U01623-1

Sequence Contig-U01623-1

GATTTAACGA CCATTTATAT TTTGGGTATT ACATTTAAAA ATGGTAACCA
ATCAAGTGGT TCAGTAATTT TAAATCAAGG TAGTTGGGTA GATATTACAA
TCGATCAATC ATCATTTATT AATAATGGTG CAAGTCAAGT TGGTGGTAGT
TTTGCAATGA TTAATGGTAT TGGTAATAGT GGTGGTGGTT CTGGTGCAAT
TAATAGTACT TTAACTATAA TTAATTCAAG TTTTATTAAT ACAACCACAA
CAACAACAAC AACAATATTA AATAATAATA ATCAAAATCA ATCAAATGAA
ATTAAAAAAG AATTAACAAC AATTGGTGGT ATAATTTTTT CAAATTCAAC
AACACTAATA ACAATTAATG ATTGTAGATT TTTTAATAAT AGTGGTAATA
ATGGTATTGG TTATATTTGG TCAGGTTATT TAGTGATGAA TAATTCATTG
ATTGAAGGTA GTAATTGTTC ACCAGCATTC TTTTTCAATT CAATAAGTGG
TATGGGTACA GGTTCACCAT TGTTCTTGAT ATCAAATACA ACATTTACAA
ATGCAATCGG TGGTGTAGGG TTTGTTGTTT TTGGTTCTGA TTCAACTACA
ACCTTTCAAC AATGTACCTT TAGTGATAAT GTTAATACCA TACCATTATC
TCTAAGTAAT T--------- -TTTCAAATA ATAACAATAG TAAATCATTG
ACAGAGTCGG CAGGTGCAAT TAATATCATT GATTCTTCAA TTATAATAGA
GTCTTCCACA TTCATCAATA ATAGAGCAGC CATTGGTGGT GCAATTCAAA
TGAATGGTTC ATTACCTGAA CAGTATGTAA AAATCTATAA TTCAGTATTT
AATGGTAATA ATGCAACCGA TATTGGTGGT TCTATTTTCT CTCAAGAGGG
TCAATTATAT CTCTACAGTT GTCAATTCTT AAATAATGAA GCGGTTGCTG
GTTCATCAGT TTATTGTTTA AATTCAAATA TAAACTTTAG TAATATGACA
TTTAACAATA ATACCGATTC ATCAATACCA ACTCCAAATG GTATTGGTTG
TGGTTCTGGT AAAGTTTGTT CCATTCAAGG TGATCAACAA TTTCAAAATA
GTTGTTCCTA TGATTATCAA CCTGATAAAC CATCATTACT ATCTCCTGGT
GAAGTGGCTG CAATCGTAAT TTGTGTTATA ATTGGTGCTG CTATCAATAC
AACTGTTTTG ATTTTAATCA TTCGTAAAAT TAGTAGAGGA AGAAATGGTT
ATTCCAAAAT TGTTAATGGT TAAACATTTA CTACTCGACT TTTTATAAAA
AAAAAAAAAA AAAATTAAAA AAAATTATAA TATTATATAA ATATTTTATA
TGAAAAAGGT CTTTTTTTTT TCCATCACTA GATATTAAAT AAATAAAAAA
AATATTAAAA AAAAAC

Translated Amino Acid Sequence Contig-U01623-1

DLTTIYILGITFKNGNQSSGSVILNQGSWVDITIDQSSFINNGASQVGGSFAMINGIGNS
GGGSGAINSTLTIINSSFINTTTTTTTTILNNNNQNQSNEIKKELTTIGGIIFSNSTTLI
TINDCRFFNNSGNNGIGYIWSGYLVMNNSLIEGSNCSPAFFFNSISGMGTGSPLFLISNT
TFTNAIGGVGFVVFGSDSTTTFQQCTFSDNVNTIPLSLSN---

---SNNNNSKSLTESAGAINIIDSSIIIESSTFINNRAAIGGAIQMNGSLPEQYVKIYNS
VFNGNNATDIGGSIFSQEGQLYLYSCQFLNNEAVAGSSVYCLNSNINFSNMTFNNNTDSS
IPTPNGIGCGSGKVCSIQGDQQFQNSCSYDYQPDKPSLLSPGEVAAIVICVIIGAAINTT
VLILIIRKISRGRNGYSKIVNG*tfttrlfikkkkkn*kkl*yyinilyekglfffhh*i
lnk*kky*kk

Homology Contig-U01623-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U01623-1 (Contig-U01623-1Q) /CSM_Contig/Conti...  1883  0.0
Contig-U00712-1 (Contig-U00712-1Q) /CSM_Contig/Conti...    44  6e-04
Contig-U12540-1 (Contig-U12540-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U13643-1 (Contig-U13643-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U13206-1 (Contig-U13206-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U12453-1 (Contig-U12453-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U12199-1 (Contig-U12199-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U11406-1 (Contig-U11406-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U07866-1 (Contig-U07866-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U06349-1 (Contig-U06349-1Q) /CSM_Contig/Conti...    34  0.55

Homology Contig-U01623-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(C93972) Dictyostelium discoideum slug cDNA, clone SSC874.       1227   0.0    1
(AU263067) Dictyostelium discoideum vegetative cDNA clone:VS...  1197   0.0    1
(AU051840) Dictyostelium discoideum slug cDNA, clone SSB148.      729   0.0    4
(AU071973) Dictyostelium discoideum slug cDNA, clone SSC874.      476   e-129  1
(FV536435) Modified Microbial Nucleic Acid.                        40   7e-06  16
(FV536434) Modified Microbial Nucleic Acid.                        40   7e-06  16
(FV536127) Modified Microbial Nucleic Acid.                        42   3e-04  15
(FV536126) Modified Microbial Nucleic Acid.                        42   3e-04  15
(FV536243) Modified Microbial Nucleic Acid.                        40   4e-04  13
(FV536242) Modified Microbial Nucleic Acid.                        40   4e-04  13

Homology Contig-U01623-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


CP000678_461(CP000678|pid:none) Methanobrevibacter smithii ATCC ...    52   7e-05
CP000909_3832(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...    41   0.093
CP001337_33(CP001337|pid:none) Chloroflexus aggregans DSM 9485, ...    41   0.12
AE017226_1351(AE017226|pid:none) Treponema denticola ATCC 35405,...    39   0.46
CP000678_1188(CP000678|pid:none) Methanobrevibacter smithii ATCC...    39   0.60
CP000678_1585(CP000678|pid:none) Methanobrevibacter smithii ATCC...    37   1.8
CP000102_1066(CP000102|pid:none) Methanosphaera stadtmanae DSM 3...    37   1.8
AE017180_750(AE017180|pid:none) Geobacter sulfurreducens PCA, co...    37   2.3
CP000592_56(CP000592|pid:none) Ostreococcus lucimarinus CCE9901 ...    37   2.3
CP000678_411(CP000678|pid:none) Methanobrevibacter smithii ATCC ...    36   3.0