Dictyostelium discoideum cDNA Contig-U01539-1

Assembled

Chromosomal Location of Contig-U01539-1

Sequence Contig-U01539-1

CCGGGCCCCC CCTCGGGTCG ACCCCGCGTC CGCAAATTAT GGTAACATCA
AATGTTGAAA AAGTACCAAT TTCAATTATT ACACATTCAT CAGATAGTAA
TTTCATTGCA TACAGTCTTA ATAATAAATT AAACATTTTT GATAATAAAT
TAAATAAACT TGTTGAATTA GAATCAGGTT CACAACACAC TGGTATTATT
AGATCAATTG AATTTACTAA AAATAATCAA TCTTTAATTA CTTCATCAAG
TGATAAATTT TTAAAAATTT GGGATACAAC AAATAATTTT AAAAATATAA
AATCAATTAA TACAAATAAA AAGATTATTT GTTCAATTTT GAACAAAGAT
GATTCAGAAA TTTTAGTATC AGATAAATGT GGTGATGTTT TTAAATATTC
ATTAATTGAT GATTCAAAGA ATAAAATTGA AGTTAGTGGT GATAAATCAG
CCAAACATGA TGAAAAAGAA AGTGATAAGA ATTTAGTATT TGGACATTAT
TCATCAATTG TTGATATTAA ATTTTCACCA TGTTTTAATT ATTTATTATC
AGCAGATAGA GATGAGAAAA TTAGAGTTAG TCATTATCCA AATTGTTTCG
ATATTGAAAG TTTTTGTCTT GGTCATACAA AATATGTTAC AGAGATATTA
TTGGTACCAG GTAGAGATGA TTTATTAATT TCAGGTTCTG GTGATGGTAC
AATTAAATTA TGGAATTGGN AACAAGGTAA ATGTTTACAA ACTGTAGATT
TCAATAGTAA GCATGAAAAT GCAATTACAA TTCCACAAGT TGTCTTCAAA
GTCGATGCAA CCACCACCAC CAATCAATTA ATATTTTCAA TTGAAAATTC
AAATAATATT TACATTTTAC CAATGAATGT TGAA------ ----AAAACA
ATTCCACTCA CTCAATCATC ACCAATTTCA ATCGATTTAA TTGATAATGG
TAAAACCATT TTAGCATCTT TATTACCAAC TACAAAAGAG GTCGATGTTG
CAATTGCTTT CGATTCAACA ACTTTATCTC AACAATCTGA TAATAAAGTA
GTTATTGCAA TCAATTCTGT TGATGCTTCA ACCACTTTAA AACCAGCTGA
ATTAAAATCA GTTTTAGAAT CAATTGAAAA GAAACAATAC AGAAAACATG
TTTCTTATTC AAAACAAATG ATGAATAGTA CTGATAATAA AAATAAAGAA
GATGATGATT TAAGTTTAGA TGAACAAGAT ATTGATGATA CTACTGATAT
TAATAACAAT AATAAAAATA AAAATCAAGA AACTATTCAA GATAGTAGAC
CATTAAAACT TAGAAAAATG ACAATTGAGG GTGATAAAGA AATTCAAAAA
GAATTAGAAG AAAAAGAATC AAAAAAACAA GAGGAATAAA AAAAAAAAAA
AAAAGATAAA AAAATTAAAT AATAAATAAA TTTATTTTAA AAATCGTTTA
AT

Translated Amino Acid Sequence Contig-U01539-1

GPPLGSTPRPQIMVTSNVEKVPISIITHSSDSNFIAYSLNNKLNIFDNKLNKLVELESGS
QHTGIIRSIEFTKNNQSLITSSSDKFLKIWDTTNNFKNIKSINTNKKIICSILNKDDSEI
LVSDKCGDVFKYSLIDDSKNKIEVSGDKSAKHDEKESDKNLVFGHYSSIVDIKFSPCFNY
LLSADRDEKIRVSHYPNCFDIESFCLGHTKYVTEILLVPGRDDLLISGSGDGTIKLWNWX
QGKCLQTVDFNSKHENAITIPQVVFKVDATTTTNQLIFSIENSNNIYILPMNVE---

---KTIPLTQSSPISIDLIDNGKTILASLLPTTKEVDVAIAFDSTTLSQQSDNKVVIAIN
SVDASTTLKPAELKSVLESIEKKQYRKHVSYSKQMMNSTDNKNKEDDDLSLDEQDIDDTT
DINNNNKNKNQETIQDSRPLKLRKMTIEGDKEIQKELEEKESKKQEE*kkkkkdkkik**
inlf*ksfn

Homology Contig-U01539-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U01539-1 (Contig-U01539-1Q) /CSM_Contig/Conti...  1943  0.0
Contig-U04455-1 (Contig-U04455-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U14188-1 (Contig-U14188-1Q) /CSM_Contig/Conti...    44  6e-04
Contig-U12401-1 (Contig-U12401-1Q) /CSM_Contig/Conti...    44  6e-04
Contig-U06959-1 (Contig-U06959-1Q) /CSM_Contig/Conti...    44  6e-04
Contig-U04925-1 (Contig-U04925-1Q) /CSM_Contig/Conti...    44  6e-04
Contig-U14796-1 (Contig-U14796-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12920-1 (Contig-U12920-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11873-1 (Contig-U11873-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11717-1 (Contig-U11717-1Q) /CSM_Contig/Conti...    42  0.002

Homology Contig-U01539-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU268940) Dictyostelium discoideum vegetative cDNA clone:VS...   476   0.0    2
(AU037073) Dictyostelium discoideum slug cDNA, clone SSB279.      813   0.0    1
(AU071679) Dictyostelium discoideum slug cDNA, clone SSC253.      476   e-129  1
(AU071351) Dictyostelium discoideum slug cDNA, clone SSB279.      476   e-129  1
(FV536245) Modified Microbial Nucleic Acid.                        44   7e-09  15
(FV536244) Modified Microbial Nucleic Acid.                        44   7e-09  15
(FV536211) Modified Microbial Nucleic Acid.                        40   1e-07  14
(FV536210) Modified Microbial Nucleic Acid.                        40   1e-07  14
(CP002027) Synthetic Mycoplasma mycoides JCVI-syn1.0 clone s...    40   2e-06  18
(CP001668) Mycoplasma mycoides subsp. capri str. GM12 transg...    40   3e-06  18

Homology Contig-U01539-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54UI3) RecName: Full=tRNA (guanine-N(7)-)-methyltransferase su...   528   0.0
AJ271892_1(AJ271892|pid:none) Mus musculus mRNA for WD-repeat do...   107   1e-21
(Q9EP82) RecName: Full=tRNA (guanine-N(7)-)-methyltransferase su...   107   1e-21
(Q5FVB6) RecName: Full=tRNA (guanine-N(7)-)-methyltransferase su...   106   2e-21
(A4IGH4) RecName: Full=tRNA (guanine-N(7)-)-methyltransferase su...   106   2e-21
AF370228_1(AF370228|pid:none) Arabidopsis thaliana unknown prote...   104   7e-21
BT063578_1(BT063578|pid:none) Zea mays full-length cDNA clone ZM...   102   3e-20
FN392319_329(FN392319|pid:none) Pichia pastoris GS115 chromosome...   102   3e-20
AC087852_15(AC087852|pid:none) Oryza sativa chromosome 3 BAC OJ1...   101   6e-20
AJ243912_1(AJ243912|pid:none) Homo sapiens short form mRNA for W...   100   1e-19