Dictyostelium discoideum cDNA Contig-U01125-1

Assembled

Chromosomal Location of Contig-U01125-1

NO HIT FOUND.

Sequence Contig-U01125-1

ATCAGGTTCA AATTTACCTC TTTCATTAAT TGTTAATGAC GAATTGTCAA
CAGATTCACT AGTATTTCAA TATCAAGAAC CATTCATTGA AAATTATACA
ACCGTTGGTT TTAAAATGGG TGGTTATATC ACAATATATG GTAATAACTT
TGGTAATGAT ACATCACTAA TTTCAGTAAT ATTAAAAGAT AAACAAGATA
AAAAACCAAT TCAATGTTTA AATTTACAAT TATTAAAATT TGATACAACA
ATTAAATGTT TATTACCGCC ATCTGTAATT AATAATAATA ATAATAATAA
CAGTTCAATA TCATCATCAT CATCATCTTC TTCTTCTTCT TCAACAACAA
CAACAACAAA TTCAAACGAT ATGATTGATA TTGATGAAAT TGATATTGAA
AAATTAATTT GGGTTACAGT AAATAATTTA ACATCAAAAG ATTTAATATT
TTTTTATTAT GATTTAGATG ATAAATACTA TAATTGTGAT GCATTAACAA
CTTGTTCAAA TCATGGTCAA TGTCAATTTG GTCAATGTGT TTGTAATCAA
GGTTGGTCAG GTCCAAATTG TAATGTTCCA GTTTTATTAA ACTCTCCCAA
TGATAATGTA TCAAGTGAGC CAAAGAAACC ATT------- ---AAAATTA
AATTCAACCG AAATTATTTG GTATTTAACT ACAAATGATT ATGTTTCATT
ATATGTTCAA TTTATTAATA AGATTAAAAT TGATAATAAT ATTAGAACAA
TTAAAATTTT AAAGAAATCA GTAACTCATG GAAATAGCAC AGTGAATGTA
ATTTTAAGAA TTCCATACTT TAATCAATCC ATTTCATTCA ATCCAACTGA
TTATAAAATC ATTTCAAATG ATCAACCATA TATAAATACA AATTTAACTT
GTGTTGTACC ACCTGAACCA ACAAATAATA ATAAATTAAT ACTTTCAGCT
GTTGGATTTT TAGTTGGTCT ATTAGCATTA TTTACCGCTA TCTCTTTATC
TTGGTATATT ATTAGAAAAA AGAATTTAAA AAAATTAAAT AACCAAAAAC
AGTCAACTGA TTTTGAATCA ACAATAATAC CACCACCACC ACCAATAACA
ACAACAATAA TTGAATCAAT TTCAACACCA TCACCACCAA CTATAACACC
ACAATAATAA TAATAATAAA ACAAATTAAA AAAAAAAATA AAAAACAATT
TATTTATTCA AAAAA

Translated Amino Acid Sequence Contig-U01125-1

SGSNLPLSLIVNDELSTDSLVFQYQEPFIENYTTVGFKMGGYITIYGNNFGNDTSLISVI
LKDKQDKKPIQCLNLQLLKFDTTIKCLLPPSVINNNNNNNSSISSSSSSSSSSSTTTTTN
SNDMIDIDEIDIEKLIWVTVNNLTSKDLIFFYYDLDDKYYNCDALTTCSNHGQCQFGQCV
CNQGWSGPNCNVPVLLNSPNDNVSSEPKKP---

---KLNSTEIIWYLTTNDYVSLYVQFINKIKIDNNIRTIKILKKSVTHGNSTVNVILRIP
YFNQSISFNPTDYKIISNDQPYINTNLTCVVPPEPTNNNKLILSAVGFLVGLLALFTAIS
LSWYIIRKKNLKKLNNQKQSTDFESTIIPPPPPITTTIIESISTPSPPTITPQ*****nk
lkkkiknnlfiqk

Homology Contig-U01125-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U01125-1 (Contig-U01125-1Q) /CSM_Contig/Conti...  1197  0.0
Contig-U11445-1 (Contig-U11445-1Q) /CSM_Contig/Conti...    50  8e-06
Contig-U14271-1 (Contig-U14271-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U13393-1 (Contig-U13393-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U11351-1 (Contig-U11351-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U08962-1 (Contig-U08962-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U12521-1 (Contig-U12521-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U10723-1 (Contig-U10723-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U08887-1 (Contig-U08887-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U06849-1 (Contig-U06849-1Q) /CSM_Contig/Conti...    46  1e-04

Homology Contig-U01125-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU060757) Dictyostelium discoideum slug cDNA, clone SLB378.      545   0.0    3
(AU033743) Dictyostelium discoideum slug cDNA, clone SLB383.      490   0.0    5
(AU033738) Dictyostelium discoideum slug cDNA, clone SLB378.      482   e-152  4
(GR574097) CBXU1926.g1 CBXU Dictyostelium purpureum 6 hr veg...    66   8e-12  2
(GR565792) CBTF1825.g1 CBTF Dictyostelium purpureum 12 hr ve...    66   9e-12  2
(FV536137) Modified Microbial Nucleic Acid.                        40   2e-05  11
(FV536136) Modified Microbial Nucleic Acid.                        40   2e-05  11
(FV536339) Modified Microbial Nucleic Acid.                        46   5e-05  4
(FV536338) Modified Microbial Nucleic Acid.                        46   5e-05  4
(FV536167) Modified Microbial Nucleic Acid.                        46   7e-05  10

Homology Contig-U01125-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AE014298_1834(AE014298|pid:none) Drosophila melanogaster chromos...    49   3e-04
X68794_1(X68794|pid:none) Drosophila melanogaster mRNA for type ...    49   3e-04
AY630342_1(AY630342|pid:none) Manduca sexta plasmatocyte-specifi...    49   4e-04
AX133531_1(AX133531|pid:none) Sequence 1 from Patent WO0131011.        49   4e-04
AM442061_1(AM442061|pid:none) Vitis vinifera contig VV78X087658....    48   8e-04
(Q9DER5) RecName: Full=Teneurin-2;          Short=Ten-2; AltName...    47   0.001
BC143738_1(BC143738|pid:none) Homo sapiens integrin, beta 4, mRN...    46   0.002
(P16144) RecName: Full=Integrin beta-4; AltName: Full=GP150; Alt...    46   0.002
A36429(S12380;S08465;A36429;S06963;B33534)integrin beta-4 chain ...    46   0.002
AF011375_1(AF011375|pid:none) Homo sapiens integrin variant beta...    46   0.002