Dictyostelium discoideum cDNA Contig-U01085-1

Assembled

Chromosomal Location of Contig-U01085-1

Sequence Contig-U01085-1

CTGCAATTTC AATCTCACTA TTGCATGAGT TTCACATGTG GAATCAAATA
ATATTTTTAA TGATCTATCT ACTGCAACAG ATCCAACAAA ACATGGTATA
ATATAAAAAA AAAAAAAAAA ATTAGACGAT AACTATTATA GTTTAAATTA
TTTATAACAT ATCTTGGTAC ATGAATCTTT ATTATTTAAT GATCAAAATC
AAAGTTGGAA ATATACTGAA CTCACCACTA TATTGGCAAC CGCAACAAAT
CTTTTATCAC CTAAAAAAAG TGAAGATGTT GGATTTTTTA TTATTGGTGA
AACAGAATCA TTCAATTTTA CAATTACAAT TAGAATATTA TCAGTTTTTC
ATTACAATTT AGATAGAGTT GATGATATTA TTTGTCTTTT TGATAAATTA
CCAGGAGTTT TTTAATAATC CTGATTATTT TNNAATTTTC ACAAAAGAAT
ATTGTTTATA TAGTTTATCA TCAAGTTATT ACCTTGAATT ATTTATCAAT
TA-------- --TATTGCAA ATCTAAATGA TAATACAATC CAATTATCTT
TATAATTGTC TTGGTATTGC ATCTGAAAAA GGTTACACTC AAAACATAAT
ATCATCCGAT CAAAATAGTC AATATTTATT AAAAATTCAA ACCAAATCAA
ATCAATCATC ATCATTATTA AATTCAAAAT TATTAAATGA TATAGTTGTT
ATATCAATAG ATCGGTCAAA TTATGAATTA TCAAATCTAT TAATAGATTT
TATTGATTCT CTGCAAACGA TCAAAATACT TTAAAAATGA AAATATTAAA
ATCAAAATAA CAAAACATCA CATAATCTAA CAATTTTTCC ATTTATATAC
TGAAGATTTG TTAATAATTC GGTTCTTTCT TTAAAACGAT TTTTTTTAAT
AAAATTGGTA TATTCGTAGA GGCTCAAACC CTTCACTCCA TGACCAAATA
CCATTTTACA ATCTTCAAAG TAACCTCTTG AGAATTTATA ATGATTATAA
AGGATAATGT CAATTATTTT TACCATTTTT ACTTTACAGT CAGTTGTACA
TACACAAGGT TCAAACTCGG GGAATTCATC TGGATCTGTT AATAGCCACA
TGTATTTACT CTTATTTTCC TCAGCTTCTT CAATGGATAA ATTTGAATGT
GGGCACTTAT TAGTAGCTCT TTCTTCCATT ATTTAAGTTG TAATATGTTT
GTGATGAAGT TTTATTTTAA TCTTAGTAAA AA

Translated Amino Acid Sequence Contig-U01085-1

aisisllhefhmwnqiiflmiyllqqiqqnmv*ykkkkkn*titiiv*iiyniswymnly
ylmikikvgnilnsplywqpqqifyhlkkvkmldflllvkqnhsilqlqleyyqffiti*
IELMILFVFLINYQEFFNNPDYFXIFTKEYCLYSLSSSYYLELFIN---

---IANLNDNTIQLSL*lswyci*krlhskhniirsk*sifiknsnqiksiiiiikfkii
k*yscyinrsvkl*iiksinrfy*fsandqntlkmkilksk*qnit*snnfsiyilkic*
*fgsffktiffnkigifveaqtlhsmtkyhftifkvts*efimiikdnvnyfyhfyftvs
ctytrfklgefiwic**phvftliflsffng*i*mwalisssffhylscnmfvmkfyfnl
sk

Homology Contig-U01085-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U01085-1 (Contig-U01085-1Q) /CSM_Contig/Conti...   876  0.0
Contig-U12057-1 (Contig-U12057-1Q) /CSM_Contig/Conti...    38  0.031
Contig-U05620-1 (Contig-U05620-1Q) /CSM_Contig/Conti...    38  0.031
Contig-U04819-1 (Contig-U04819-1Q) /CSM_Contig/Conti...    38  0.031
Contig-U11419-1 (Contig-U11419-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U10972-1 (Contig-U10972-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U10945-1 (Contig-U10945-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U10854-1 (Contig-U10854-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U09318-1 (Contig-U09318-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U06795-1 (Contig-U06795-1Q) /CSM_Contig/Conti...    30  7.5

Homology Contig-U01085-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU060093) Dictyostelium discoideum slug cDNA, clone SLA275.      450   0.0    3
(C25553) Dictyostelium discoideum slug cDNA, clone SLA275.        234   0.0    5
(C83833) Dictyostelium discoideum slug cDNA, clone SSA316.        575   0.0    2
(AU071349) Dictyostelium discoideum slug cDNA, clone SSB276.      476   e-129  1
(BJ347397) Dictyostelium discoideum cDNA clone:dda27a05, 3' ...   167   3e-99  4
(U63608) Dictyostelium discoideum Tdd-4 transposable element...   159   2e-54  3
(BJ329988) Dictyostelium discoideum cDNA clone:dda27a05, 5' ...   206   2e-48  1
(FV536243) Modified Microbial Nucleic Acid.                        40   0.001  17
(FV536242) Modified Microbial Nucleic Acid.                        40   0.001  17
(FV536349) Modified Microbial Nucleic Acid.                        42   0.002  13

Homology Contig-U01085-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC117081_62(AC117081|pid:none) Dictyostelium discoideum chromoso...    48   8e-04
AE014185_364(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    34   9.4