Dictyostelium discoideum cDNA Contig-U00438-1

Assembled

Chromosomal Location of Contig-U00438-1

Sequence Contig-U00438-1

AAATACATAA ATAAATAAAT AAATAAATAA ATAAATAAAT AAATAAATAA
ATAAATAAAT AAATATATAG ATATAAAATG CATTATTCAA TTAAAATTCA
TAATATAAAA GCTTATGATT TATCCTTAAA AAAAGAAAAT CATAATGCAA
ATAATATAAA TATTGATCCA TATGTTAAAT TAAAATTTGA TCAATTTAAA
AAATTTAAAA CTGAATCAAT TAGTAAAAGT ATTACACCAA CATGGAAATT
TGAGCAAACA TTTCATATAC CAATAATGAA AGATCAAGAT TTAAAGAATA
AAAAAGTTGA AATTGATTGT TATGATTCAT GTGTTATTGG CGGCGATAAT
CTTATTGGTG GTTGCTCTAT TGATTTCTTT ACAGTCTTAA ATGGTCCAGT
TCATCATAAA TTAGTTTTAA GAAATAAAGG TGTTGCTAAT GGAACAATTG
AATTCGACTT GGAAATGTCT GAATTTTTAG AGACTAAATT AACATTTAGA
AACCTTAAAA CTTCATATTA TGCTGGTGCT TTACCAATTA CTTCAACCGA
TCAATCAATT GAAAAATATT T--------- -CAACAACAA CAACAACAAC
AACAACAACA ACAACAACAA CAACAACAAC AACAACAAAA ATATCAAGGA
CCAGAATGGA CAGATCCAAG ATTACCAAGT GGATGGGTAA TTAGACAAGA
TCAAAGTGGT AAACAATATT ATGTTGATCA CAACACAAAG AGTGCTCATT
GGACTTTACC ACCACATATT GCTGTATTAT TAAATCAACC ATCAACTTCA
AATGCTACTA CACCACTTCA ACCAATGAAA CCAATTCAAC AACAAGGATA
TGTCTATCCA CAACAACAAC AACAACAACA ACAAGCAGTA GCTGGATATC
CAGGTGCTGT TCAATATGGT AGCTATCCTC AACCACAACA AGGTTATGTA
TACCCACAAT ACTATCAACA ATATCCAACT TCTACTTATA TGATGTCTTA
TCCTTCTTCA AGTTGCCACA GTCGTCATCA TCATTGCTAA ATAGCAGTTT
ATAAAAAAAA AAAAAATCAT AATAAATTTT TTAAAAAAAC ACAACAAACC
TAAATGTGGT AAAAAACTGA AATTTTATTT TGTAAAAAAT TAGCATTTTA
CAACATTTGG AATTTGCCAT CTTTTTAAAA AAAAAAAAAA AAGTTTTAAA
AATAATATCT TGCAAAGAAA AATAAATAAA AATAATGTAA ATAATACTTT
TTTTCAAACG AAAAAA

Translated Amino Acid Sequence Contig-U00438-1

ihk*ink*ink*ink*ink*IYRYKMHYSIKIHNIKAYDLSLKKENHNANNINIDPYVKL
KFDQFKKFKTESISKSITPTWKFEQTFHIPIMKDQDLKNKKVEIDCYDSCVIGGDNLIGG
CSIDFFTVLNGPVHHKLVLRNKGVANGTIEFDLEMSEFLETKLTFRNLKTSYYAGALPIT
STDQSIEKY---

---QQQQQQQQQQQQQQQQQQQKYQGPEWTDPRLPSGWVIRQDQSGKQYYVDHNTKSAHW
TLPPHIAVLLNQPSTSNATTPLQPMKPIQQQGYVYPQQQQQQQQAVAGYPGAVQYGSYPQ
PQQGYVYPQYYQQYPTSTYMMSYPSSSCHSRHHHC*iavykkkknhnkffkktqqt*mw*
kteilfckklafyniwnlpsf*kkkkkf*k*ylakknk*k*ck*yffsnek

Homology Contig-U00438-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U00438-1 (Contig-U00438-1Q) /CSM_Contig/Conti...   934  0.0
Contig-U11785-1 (Contig-U11785-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U09182-1 (Contig-U09182-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U08884-1 (Contig-U08884-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U12546-1 (Contig-U12546-1Q) /CSM_Contig/Conti...    38  0.032
Contig-U09628-1 (Contig-U09628-1Q) /CSM_Contig/Conti...    38  0.032
Contig-U15692-1 (Contig-U15692-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U15439-1 (Contig-U15439-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U14090-1 (Contig-U14090-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U11650-1 (Contig-U11650-1Q) /CSM_Contig/Conti...    36  0.13

Homology Contig-U00438-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ326839) Dictyostelium discoideum cDNA clone:dda18o06, 5' ...   680   0.0    3
(BJ344348) Dictyostelium discoideum cDNA clone:dda18o06, 3' ...   357   e-175  3
(BJ399252) Dictyostelium discoideum cDNA clone:dds5f02, 3' e...   357   e-175  2
(AU270520) Dictyostelium discoideum vegetative cDNA clone:VS...   333   e-161  2
(AU074010) Dictyostelium discoideum slug cDNA, clone SSJ235.      313   1e-82  2
(AU073623) Dictyostelium discoideum slug cDNA, clone SSH690.      240   1e-82  2
(C90858) Dictyostelium discoideum slug cDNA, clone SSJ235.        178   7e-67  2
(DU586659) OO__Ba0078M19.f OO__Ba Oryza officinalis genomic ...    34   0.67   3
(DU581247) OO__Ba0071G14.f OO__Ba Oryza officinalis genomic ...    34   0.71   3
(FV536171) Modified Microbial Nucleic Acid.                        48   0.94   1

Homology Contig-U00438-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AB089315_1(AB089315|pid:none) Dictyostelium discoideum dwwa mRNA...    67   1e-09
AM494964_14(AM494964|pid:none) Leishmania braziliensis chromosom...    54   2e-05
CP000079_13(CP000079|pid:none) Leishmania major strain Friedlin ...    52   5e-05
AY333788_1(AY333788|pid:none) Trypanosoma cruzi CCCH zinc-finger...    51   1e-04
AF229024_1(AF229024|pid:none) Oryctolagus cuniculus ubiquitin-pr...    50   1e-04
AC159425_43(AC159425|pid:none) Trypanosoma brucei chromosome 3 c...    49   4e-04
EF173367_6(EF173367|pid:none) Aedes aegypti clone BAC 124C17, co...    49   5e-04
AM270158_8(AM270158|pid:none) Aspergillus niger contig An08c0030...    48   9e-04
AE016818_493(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    47   0.001
AB071179_1(AB071179|pid:none) Homo sapiens NEDL3 mRNA for NEDD4-...    47   0.001