Dictyostelium discoideum cDNA Contig-U00307-1

Assembled

Chromosomal Location of Contig-U00307-1

Sequence Contig-U00307-1

ATCGTGAATA TAATCATAGT CATCACCATT TATTAAGTTC AAGTTCAAAT
AATGTAATGA TAAATAATAG AAGTATTGGT AAATCATTTT CAACTGGTAA
TTTCTCACAA CCTCAACCAA TAATGCCTTC AAATGGTATT GGTGGAAGTG
GTGGCGGTGG ATTAGGTACA ACATTGAGTG TTGGTAATGG TGGTATTGTT
GGTGGATTGC AATCGAGATC ATCATCATTC GAAGAGAATC AATTACAATA
TGCAATTGAA AGTTTTATGG AGGTTTACAA TCATTTAACT AGTAAAGATA
AAGTTGATAC TTCTATTTGG TTAGAAGAAG AAAAGGAAGA CATAAACGTT
TACTATATAA ACAATACCAA TATTGATGAT AAATTCTATA GATCAATTAA
ATATGCTTCG TTGAATCAAT TGATTTTAAA GTTAACATGT GAATCAAATA
CCGAATTAAG ATTCACAAAA ACTTTTATCA CAACTTATAG ATCATTTACA
ACAGGTGATA TATTCTTAAT GAAATTAATT CAACGTTATT TTACACCAAA
TCTAAAGAAT ATTGTACCAT ATCAATTTGT TCAAAAAATT CAAATTCCAA
TACAA----- -----AATTA CCAATAATAA ATAATGGCCA AGGTATACCA
AAGGCAAAGA TATTTTGGAT GAAATATTCA ACAGAGTTTA TTTTCTCACA
AAGTTCAACT GATATTGCTG AACAATTAAC TTTGTTAGAT TTCGATTCCT
ATAAATCCAT TGAAGAGATT GAATTATTGA ATCAAGCTTG GTCAAAACCT
GATCAAAAAA CCAATACACC AAATATTGCT TCGATGGTCA ATAGATTCAA
TAGTTTTAGT TCATTTGTTT CTTGGGCAAT ACTTAGAGAG AACGATATTA
AACAAAGATC GAAAATGATG TTAAAAATGA TAAAGATTTG TTATGCACTT
TATAAACTTT CAAATTTCAA TGGACTATTA GCTGGCTTAA GTGGTTTAAT
GGCAAGTGGA GTTTATCGTT TAAATCATAC CAAATCATTA ATCTCAAAAC
AGTATCAAAA GAAATTCGAT TTCCTATGTA AATTCCTGGA TACCAAAAAA
TCTCATAAAG TATATCGTGA TATAATTCAT TCAACATGTC CACCATTAAT
ACCATACTTG GGTATCTATT TAACCGATTT AACCTTTATT GAAGATGGAA
ATCAAGATGA AATCAAAGGT TTAATTAACT TTAAAAAGAG AGAAATGATC
TTTAATACCA TTTTGGAAAT CCAACAATAT CAACAACAAG GTTATACAAT
TAAACCAAAA CCTTCAGTAT TAGGTTTCCT TTGTGAATTA CCTCATATGA
GTGATAAGAA AAAATTTGAA GATGATACTT ATGAACAATC AATTTTATTA
GAACCTAAAA ATTCAACAAA ACTTGAAGTA ATGAATGCTA AAAAGTAAAA
AAAAATAAAA TATAAAGTAA TATTAAAAAA AAAAAAAAAA AAAAAAAAAA
AAAAAAAAA

Translated Amino Acid Sequence Contig-U00307-1

REYNHSHHHLLSSSSNNVMINNRSIGKSFSTGNFSQPQPIMPSNGIGGSGGGGLGTTLSV
GNGGIVGGLQSRSSSFEENQLQYAIESFMEVYNHLTSKDKVDTSIWLEEEKEDINVYYIN
NTNIDDKFYRSIKYASLNQLILKLTCESNTELRFTKTFITTYRSFTTGDIFLMKLIQRYF
TPNLKNIVPYQFVQKIQIPIQ---

---LPIINNGQGIPKAKIFWMKYSTEFIFSQSSTDIAEQLTLLDFDSYKSIEEIELLNQA
WSKPDQKTNTPNIASMVNRFNSFSSFVSWAILRENDIKQRSKMMLKMIKICYALYKLSNF
NGLLAGLSGLMASGVYRLNHTKSLISKQYQKKFDFLCKFLDTKKSHKVYRDIIHSTCPPL
IPYLGIYLTDLTFIEDGNQDEIKGLINFKKREMIFNTILEIQQYQQQGYTIKPKPSVLGF
LCELPHMSDKKKFEDDTYEQSILLEPKNSTKLEVMNAKK*kkikykvilkkkkkkkkkkk

Homology Contig-U00307-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U00307-1 (Contig-U00307-1Q) /CSM_Contig/Conti...  2793  0.0
Contig-U11043-1 (Contig-U11043-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U15518-1 (Contig-U15518-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U14335-1 (Contig-U14335-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U11414-1 (Contig-U11414-1Q) /CSM_Contig/Conti...    38  0.039
Contig-U06002-1 (Contig-U06002-1Q) /CSM_Contig/Conti...    38  0.039
Contig-U04637-1 (Contig-U04637-1Q) /CSM_Contig/Conti...    38  0.039
Contig-U16217-1 (Contig-U16217-1Q) /CSM_Contig/Conti...    36  0.15
Contig-U16034-1 (Contig-U16034-1Q) /CSM_Contig/Conti...    36  0.15
Contig-U15924-1 (Contig-U15924-1Q) /CSM_Contig/Conti...    36  0.15

Homology Contig-U00307-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AY160091) Dictyostelium discoideum nucleotide exchange fact...  1631   0.0    1
(AF275723) Dictyostelium discoideum Ras guanine nucleotide e...  1631   0.0    1
(BJ323883) Dictyostelium discoideum cDNA clone:dda12o16, 5' ...  1199   0.0    1
(C91445) Dictyostelium discoideum slug cDNA, clone SSK260.       1084   0.0    1
(GR566087) CBTF2050.g1 CBTF Dictyostelium purpureum 12 hr ve...   129   2e-87  6
(GR569652) CBTF598.g1 CBTF Dictyostelium purpureum 12 hr veg...   129   8e-82  6
(GR577752) CBXW775.g1 CBXW Dictyostelium purpureum 6 hr vege...   129   1e-51  4
(BJ340350) Dictyostelium discoideum cDNA clone:dda12o16, 3' ...   145   6e-30  1
(FV536179) Modified Microbial Nucleic Acid.                        42   8e-04  2
(FV536178) Modified Microbial Nucleic Acid.                        42   8e-04  2

Homology Contig-U00307-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AF275723_1(AF275723|pid:none) Dictyostelium discoideum Ras guani...   493   e-137
U53884_1(U53884|pid:none) Dictyostelium discoideum aimless RasGE...   169   2e-40
AY160090_1(AY160090|pid:none) Dictyostelium discoideum nucleotid...   169   2e-40
AY160099_1(AY160099|pid:none) Dictyostelium discoideum nucleotid...   160   1e-37
AY160100_1(AY160100|pid:none) Dictyostelium discoideum nucleotid...   156   2e-36
AF474377_1(AF474377|pid:none) Dictyostelium discoideum Ras GTP e...   156   2e-36
AY160098_1(AY160098|pid:none) Dictyostelium discoideum nucleotid...   154   1e-35
AC115682_8(AC115682|pid:none) Dictyostelium discoideum chromosom...   141   7e-32
AC117082_5(AC117082|pid:none) Dictyostelium discoideum chromosom...   139   2e-31
AC115592_17(AC115592|pid:none) Dictyostelium discoideum chromoso...   138   5e-31