Homology Contig-U00301-1 vs Protein
Query= Contig-U00301-1 (Contig-U00301-1Q) /CSM_Contig/Contig-U00301-1Q.Seq.d
(482 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 128 2e-34
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 128 2e-34
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 58 1e-07
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 47 2e-04
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 47 2e-04
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 45 7e-04
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for... 45 7e-04
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa... 44 0.002
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region... 42 0.009
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce... 42 0.009
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg... 42 0.009
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 37 0.18
AF066073_1(AF066073|pid:none) Dictyostelium discoideum SP85 (psp... 37 0.23
AC116100_6(AC116100|pid:none) Dictyostelium discoideum chromosom... 37 0.30
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 35 0.68
AF529180_1(AF529180|pid:none) Drosophila melanogaster extracellu... 35 0.88
AE014297_4403(AE014297|pid:none) Drosophila melanogaster chromos... 35 0.88
AF205357_1(AF205357|pid:none) Drosophila melanogaster extracellu... 35 0.88
AF529179_1(AF529179|pid:none) Drosophila melanogaster extracellu... 35 0.88
(Q868Z9) RecName: Full=Papilin; Flags: Precursor; 35 0.88
AC117076_50(AC117076|pid:none) Dictyostelium discoideum chromoso... 35 1.2
GN124069_1(GN124069|pid:none) Sequence 6965 from Patent WO200903... 35 1.2
T24385(T24385) hypothetical protein T03D8.7 - Caenorhabditis ele... 33 4.4
(Q5IJ48) RecName: Full=Crumbs homolog 2; AltName: Full=Crumbs-li... 32 5.7
AF076513_1(AF076513|pid:none) Strongylocentrotus purpuratus scav... 32 5.7
AL365504_2(AL365504|pid:none) Human DNA sequence from clone RP11... 32 5.7
A49175(A49175;PH1570;S32113) Motch B protein - mouse (fragment) ... 32 5.7
AK155137_1(AK155137|pid:none) Mus musculus NOD-derived CD11c +ve... 32 5.7
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName... 32 5.7
BC172642_1(BC172642|pid:none) Synthetic construct Mus musculus c... 32 5.7
AK123000_1(AK123000|pid:none) Homo sapiens cDNA FLJ16786 fis, cl... 32 5.7
AY720432_1(AY720432|pid:none) Homo sapiens crumbs-like protein 2... 32 5.7
CP000939_2892(CP000939|pid:none) Clostridium botulinum B1 str. O... 32 7.5
(P23785) RecName: Full=Granulins; Contains: RecName: Full=Acro... 32 7.5
CP000726_2736(CP000726|pid:none) Clostridium botulinum A str. AT... 32 7.5
CP000728_2793(CP000728|pid:none) Clostridium botulinum F str. La... 32 7.5
AM412317_2891(AM412317|pid:none) Clostridium botulinum A str. AT... 32 7.5
BC072469_1(BC072469|pid:none) Rattus norvegicus granulin, mRNA (... 32 7.5
(Q95209) RecName: Full=Sortilin-related receptor; AltName: Full=... 32 9.8
AL606536_6(AL606536|pid:none) Mouse DNA sequence from clone RP23... 32 9.8
AK074062_1(AK074062|pid:none) Homo sapiens mRNA for FLJ00133 pro... 32 9.8
CP001185_1763(CP001185|pid:none) Thermosipho africanus TCF52B, c... 32 9.8
BC169202_1(BC169202|pid:none) Synthetic construct Homo sapiens c... 32 9.8
AF406641_1(AF406641|pid:none) Mus musculus crumbs-like protein 1... 32 9.8
>(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;
Length = 555
Score = 128 bits (322), Expect(3) = 2e-34
Identities = 53/53 (100%), Positives = 53/53 (100%)
Frame = +3
Query: 255 PPVDQCRNQHCPHGYSCRVIKGCATCVRDARPPHNLCRGFGCPEGSHCEVLEK 413
PPVDQCRNQHCPHGYSCRVIKGCATCVRDARPPHNLCRGFGCPEGSHCEVLEK
Sbjct: 205 PPVDQCRNQHCPHGYSCRVIKGCATCVRDARPPHNLCRGFGCPEGSHCEVLEK 257
Score = 36.6 bits (83), Expect(3) = 2e-34
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +1
Query: 142 GGGRDCESHRSE---YTCKSDRSCAYLPFVSCCGNIQCPWVHQLTN 270
GGG C+ R Y + S +P CGNIQCPW H N
Sbjct: 144 GGGHKCDRMRCPEGFYCEEQGGSACCVPHHDGCGNIQCPWGHYCVN 189
Score = 23.5 bits (49), Expect(3) = 2e-34
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 457 PPPQICGS 480
PPPQICGS
Sbjct: 272 PPPQICGS 279
Score = 120 bits (301), Expect = 2e-26
Identities = 54/54 (100%), Positives = 54/54 (100%)
Frame = +1
Query: 73 MRILYLASLLFLITLYLSPTFGWGGGRDCESHRSEYTCKSDRSCAYLPFVSCCG 234
MRILYLASLLFLITLYLSPTFGWGGGRDCESHRSEYTCKSDRSCAYLPFVSCCG
Sbjct: 1 MRILYLASLLFLITLYLSPTFGWGGGRDCESHRSEYTCKSDRSCAYLPFVSCCG 54
Score = 39.7 bits (91), Expect = 0.036
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 255 PPVDQCRNQHCPHGYSCRVIKGCATCVRDA---RPPHNLCRGFGCPEGSHCEVLE 410
P D C N CP G+ C G CV RPP + CR CP G C V++
Sbjct: 171 PHHDGCGNIQCPWGHYCVNEHGKCRCVPHRPPPRPPVDQCRNQHCPHGYSCRVIK 225
Score = 38.1 bits (87), Expect = 0.10
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +3
Query: 255 PPVDQCRNQHCPHGYSCRVIKGCATCVRDARPPHNLCRGFGCPEGSHCEVL 407
PP C + +C GY C +I G TC+R LC CP CE +
Sbjct: 272 PPPQICGSVNCGPGYICTIINGHPTCIRG---DGYLCNQTRCPHDYQCETI 319
Score = 36.2 bits (82), Expect = 0.40
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 270 CRNQHCPHGYSCRVIKGCATCVRDARPPHNLCRGFGCPEGSHC 398
C CPH Y C I +T + P ++ C+ CP GS C
Sbjct: 305 CNQTRCPHDYQCETI---STNIVKCSPKNDECKWHRCPPGSSC 344
Score = 34.3 bits (77), Expect = 1.5
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 270 CRNQHCPHGYSCRVIKGCATCVRDARPP 353
C+ CP +SC++I+G TC++ ARPP
Sbjct: 363 CKVTQCPTDFSCKMIRGNPTCIK-ARPP 389
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 666,544,362
Number of extensions: 13093067
Number of successful extensions: 30947
Number of sequences better than 10.0: 44
Number of HSP's gapped: 30842
Number of HSP's successfully gapped: 94
Length of query: 160
Length of database: 1,051,180,864
Length adjustment: 118
Effective length of query: 42
Effective length of database: 669,266,902
Effective search space: 28109209884
Effective search space used: 28109209884
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
Dictyostelium discoideum cDNA Project Home