<Clone: Contig-U00291-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U00291-1

Dictyostelium discoideum cDNA Project Home

Assembled

Chromosomal Location of Contig-U00291-1

< more Chromosomal info >

Chromosome Number 3
Length 6358359
Start Poin 2,749,491
End Point 2,748,429
Strand MINUS

Sequence Contig-U00291-1

CTAAATTAAA ACCAAAACAA ACCTCTATAA CTGATTTCTT TTCACCAACT
GTAAAAACTT CAAAAGCTGA TAAAATATCA CCTTTTTTTT CAAACGTTAA
TAATGCATCA ACTACAAATA CAACCACTAA TAATAAAAAT GTAAATAAAA
AAACAACAAC AACAACAACT ACAAAAAAAA GAAATAATAA AGATGAAGAA
AATGAAGATG ATAATGAAGA AGAAGAAGAA GAAGAAGAAG AAGAAGAAGA
TAAAAAATCA AAGAAAAAAA CTACGACAAC TACAACAACA ACAACAACAA
CAGCATATAA AAAGAAAAGT TCACCAAAAA AAAA------ ----TCTAAA
TTTCGATGTT AATTGTATCT TACCACATGG CAGTTATTTC TTAAATTTAG
GTTCTCCAAA TAAAGAAAAT TTACAAAAAT CAAGAGATTT AATGATTCAT
GAAATGAAAA ATTGTGAAAT ATTAGGAGTT AAACATTTTA ATTTTCATCC
AGGATCACAT TTAAATGAAA TTAGTGAATC AGAATCAATA AAGATAGTTG
CTGAATCATT GGATTATATT TTAGAGAGAA CTAAAGATGT TGTTGCAGTC
ATTGAGTGTA CAGCTGGTCA AGGTACAAAT TTAGGTTACA CATTTGAACA
TTTACGTGAC ATGATTGCAT TGGTTAAGGA TAAAACAAGA GTTGGTGTTT
GTTTAGATAC TTGTCATATG TTTGCTGCAG GTTATAATAT TTCAACAAAG
AGTAATTGTG ATGTGATTTT CCAAGAGTTT GATAAAGTGG TTGGTTTCAA
ATATTTAAAA GGTGTTCATT TAAATGACTC AAAATCAACT TGTGGTTCAA
AACTTGATCG TCATGAAAAT ATTGGTAAAG GTCATATTGG AACGCCATGT
TTCAAATATT TAGTAAATGA TAAACGTTTT CAAAATATTC CAATGATTTT
AGAAACTGTT GGTCCATATG ATCAAGAAGT TAAATTATTA TATTCATTTA
TTGAAGATGA TGATAAAAAA TAATAATAAT AATAAAAAAT AAAAATAAAA
AAAATCTAAT CAACAAGTAA

Translated Amino Acid Sequence Contig-U00291-1

<All Frames> 
KLKPKQTSITDFFSPTVKTSKADKISPFFSNVNNASTTNTTTNNKNVNKKTTTTTTTKKR
NNKDEENEDDNEEEEEEEEEEEDKKSKKKTTTTTTTTTTTAYKKKSSPKK---

---LNFDVNCILPHGSYFLNLGSPNKENLQKSRDLMIHEMKNCEILGVKHFNFHPGSHLN
EISESESIKIVAESLDYILERTKDVVAVIECTAGQGTNLGYTFEHLRDMIALVKDKTRVG
VCLDTCHMFAAGYNISTKSNCDVIFQEFDKVVGFKYLKGVHLNDSKSTCGSKLDRHENIG
KGHIGTPCFKYLVNDKRFQNIPMILETVGPYDQEVKLLYSFIEDDDKK*****kikikki
*sts


Homology Contig-U00291-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U00291-1 (Contig-U00291-1Q) /CSM_Contig/Conti...  1324  0.0
Contig-U04774-1 (Contig-U04774-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U15818-1 (Contig-U15818-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11874-1 (Contig-U11874-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U11030-1 (Contig-U11030-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U11924-1 (Contig-U11924-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U11698-1 (Contig-U11698-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U09114-1 (Contig-U09114-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U06537-1 (Contig-U06537-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U15939-1 (Contig-U15939-1Q) /CSM_Contig/Conti...    36  0.11


Homology Contig-U00291-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(AB055424) Dictyostelium discoideum mRNA for DdAPN, complete...  1324   0.0    1
(BJ339947) Dictyostelium discoideum cDNA clone:dda11f04, 3' ...  1304   0.0    1
(BJ345511) Dictyostelium discoideum cDNA clone:dda23m22, 3' ...  1302   0.0    1
(AU074650) Dictyostelium discoideum slug cDNA, clone SSL450.      476   e-129  1
(AU038763) Dictyostelium discoideum slug cDNA, clone SSL450.      325   8e-86  2
(BJ323535) Dictyostelium discoideum cDNA clone:dda11f04, 5' ...   163   7e-46  3
(BI816039) PfESToaa35f06.y1 Plasmodium falciparum 3D7 asexua...    52   2e-16  5
(BU497921) PfESToab90b03.y1 Plasmodium falciparum 3D7 asexua...    52   3e-16  5
(AF326063) Plasmodium falciparum AP endonuclease 1 (ape1) mR...    52   2e-14  5
(AF284763) Plasmodium falciparum apurinic/apyrimidinic endon...    52   1e-13  5


Homology Contig-U00291-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


(Q966U0) RecName: Full=Endonuclease 4 homolog;          EC=3.1.2...   467   e-130
(B7LVB9) RecName: Full=Probable endonuclease 4;          EC=3.1....   249   1e-64
(Q87SC6) RecName: Full=Probable endonuclease 4;          EC=3.1....   248   3e-64
(B0BTA9) RecName: Full=Probable endonuclease 4;          EC=3.1....   246   8e-64
(A8ZSE7) RecName: Full=Probable endonuclease 4;          EC=3.1....   246   1e-63
CP001139_2142(CP001139|pid:none) Vibrio fischeri MJ11 chromosome...   246   1e-63
(Q7MNR1) RecName: Full=Probable endonuclease 4;          EC=3.1....   244   3e-63
(A7MS84) RecName: Full=Probable endonuclease 4;          EC=3.1....   244   3e-63
(B7N5C2) RecName: Full=Probable endonuclease 4;          EC=3.1....   244   4e-63
(A7ZNY3) RecName: Full=Probable endonuclease 4;          EC=3.1....   244   4e-63


<Clone: Contig-U00291-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

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