Dictyostelium discoideum cDNA Contig-U00078-1

Assembled

Chromosomal Location of Contig-U00078-1

Sequence Contig-U00078-1

AATAATAATA ATAATAATAT GAATAATAAT ATGAATAATA ATATGAATAA
TATGAATAAC ATTAATAACA ATAGTAATAT TAGTAGATTC GAACATCAAA
ATAACAGAAC ATCTTCACCA TTTGAAAATA ATAGTAACAA CAACAATAAT
AACAATAACA ATAATAATAA TAATATCAAC TATAATAATA TTGGACAAAG
AGCACTTTCA CCACAATCAT CACAACATAA AGATAGAAGA GAAATAATAT
TAGATGAAGA ATCTGATATT AATGAAAGAT CAAAAACAAG ATCACCATCA
ATTGTTAAAG AAGCTGAAGA AAAGAGAGAA ACTGTGATTG TAGATAAGGA
AAGATCACCA ACTCCTATTA TTACAGAAAA ACCAGATGAA AAACAAGTTG
AGAAGGTTAC CGATAAAGAA TCATCTTTAG TTGAAAAAGT TGATAAAGAA
AATGAAAAAG AATCACCATC ATCGTCATCA TCATCAAAAG AAATCGAAAA
AGAAACCGAA AAAGAAAAAG AAAAAGAGAA AGAAAAAGAG AAAGAAGTGG
AAAAAGAGGT TGAAAAAGAG ATTGAAAATG ATAAAGAAAA AGAAAAAGAG
AAAGAAGTGG AAAAAGATGT TGAAGAAAAT AAATCTGTTG AAAAATCAAG
TGAAAAACCA GTTGAAAAGG AATCCACAAC TACTACAACT AATGATGAGG
ATGAAGAA-- --------CA CCAACTACTA CCACCACCAC CACCACTAAC
ACCACAACTG TAGAACCAAC ACACAAAGAC AAAGAGTCAT CAAAAAAATG
ATGATACTAC TACTACTACC ACCACCACCA CTACAAAATC AGCCAAATCT
CCAAACTCTT CACCAACTAG ATCTGATGAA GTTGTTGAAC CACATCAAGA
TGCCTCACAA GAGGAAATCA ATAAAAGAAA ATTAGAAGAT GATATCACTT
CAACTCCAAG TAAAAGATTA AAACCAGATT CAACTCCTTC CTCTGCAACA
ACTGCTTCAA CTCCATCTGA ACAACCTGAA TCACCACTAA AGAAAGAAAA
TCCAGTTGGG GAAACTTTAT CACCAGAAAT TAAAGATTCA AAATCATCTT
CATCTTCTTC ATCCTCATCA TCATCATCAA CTAATACTGG CAGTAGCAGT
ACCAATAGTT CAGCTAAAAA TGAACGTGAT AGAGATAGAG AAAGAGAAAG
AGAACGTGAA AGGGATAGAG AAAGAGAGAG AGAAAGAGAA AGAGAGAGAG
AAAGAGAACG TGAAAAAAAT AAACAACCAA CAAGGGCTCC AATTAAACCT
TCATCTCGTA AACTCGAAAG ATAAAAATAA AAAAAATAAT

Translated Amino Acid Sequence Contig-U00078-1

NNNNNNMNNNMNNNMNNMNNINNNSNISRFEHQNNRTSSPFENNSNNNNNNNNNNNNNIN
YNNIGQRALSPQSSQHKDRREIILDEESDINERSKTRSPSIVKEAEEKRETVIVDKERSP
TPIITEKPDEKQVEKVTDKESSLVEKVDKENEKESPSSSSSSKEIEKETEKEKEKEKEKE
KEVEKEVEKEIENDKEKEKEKEVEKDVEENKSVEKSSEKPVEKESTTTTTNDEDEE---

---PTTTTTTTTNTTTVEPTHKDKESSKK**yyyyyhhhhykisqisklftn*i**sc*t
tsrcltrgnq*kkirr*yhfnsk*kiktrfnsflcnncfnsi*tt*ittkerksswgnfi
trn*rfkiififfiliiiin*ywq*qyq*fs*k*t**r*rkrkrt*kg*rkrerkrkrer
krt*kk*ttnkgsn*tfis*trkikikki

Homology Contig-U00078-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U00078-1 (Contig-U00078-1Q) /CSM_Contig/Conti...   626  e-179
Contig-U11311-1 (Contig-U11311-1Q) /CSM_Contig/Conti...    66  2e-10
Contig-U11477-1 (Contig-U11477-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U03798-1 (Contig-U03798-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U03720-1 (Contig-U03720-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U11661-1 (Contig-U11661-1Q) /CSM_Contig/Conti...    50  9e-06
Contig-U08172-1 (Contig-U08172-1Q) /CSM_Contig/Conti...    50  9e-06
Contig-U12008-1 (Contig-U12008-1Q) /CSM_Contig/Conti...    48  4e-05
Contig-U13460-1 (Contig-U13460-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U12765-1 (Contig-U12765-1Q) /CSM_Contig/Conti...    46  1e-04

Homology Contig-U00078-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AB009080) Dictyostelium discoideum trfA gene for TRFA, comp...   583   0.0    7
(BJ340617) Dictyostelium discoideum cDNA clone:dda3e05, 3' e...   583   0.0    4
(BJ342956) Dictyostelium discoideum cDNA clone:dda15f18, 3' ...   583   e-178  3
(BJ325930) Dictyostelium discoideum cDNA clone:dda3e05, 5' e...   480   e-166  3
(AU053344) Dictyostelium discoideum slug cDNA, clone SLI432.      480   e-150  2
(BJ326173) Dictyostelium discoideum cDNA clone:dda15f18, 5' ...   480   e-150  2
(AU261368) Dictyostelium discoideum vegetative cDNA clone:VS...   414   e-149  3
(AU034788) Dictyostelium discoideum slug cDNA, clone SLE331.      270   e-105  3
(AU053734) Dictyostelium discoideum slug cDNA, clone SLJ576.      246   2e-60  1
(AU053077) Dictyostelium discoideum slug cDNA, clone SLF635.      224   8e-54  1

Homology Contig-U00078-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(O77033) RecName: Full=General transcriptional corepressor trfA;...   186   1e-45
FB803778_1(FB803778|pid:none) Sequence 23051 from Patent WO20080...    36   2.8
DQ177346_156(DQ177346|pid:none) Koi herpesvirus strain KHV-I, co...    36   3.6
(A5WUN7) RecName: Full=Calmodulin-regulated spectrin-associated ...    35   4.7
CP000673_809(CP000673|pid:none) Clostridium kluyveri DSM 555, co...    35   4.7
AJ786380_1(AJ786380|pid:none) Cryptosporidium parvum mt1 gene fo...    35   6.2
EU719627_1(EU719627|pid:none) Human parainfluenza virus 3 isolat...    35   6.2
FB803740_1(FB803740|pid:none) Sequence 23013 from Patent WO20080...    35   6.2
AB052918_1(AB052918|pid:none) Homo sapiens hMCLC-4 mRNA for Mid-...    35   8.1
AB052916_1(AB052916|pid:none) Homo sapiens hMCLC-2 mRNA for Mid-...    35   8.1