Dictyostelium discoideum cDNA Clone VSK250

Sequence VSK250

ATCGGATGGG TAATGGGACG AATTTTATGG AGATTTTCTT ATAAATGGAG
TTATCCTACA ATAGGAGATA TTGAAATATT TAAAAATTTT ACAGCATATA
ATCAAATAAT ACATGGAACA GTTATTGAAA TCGTTTGGAC ATTAATTCCA
ACAGTAATAT TATATTTAAT AGCAATTCCA TCCTTTACAT TATTATATGC
GATGGATGAA ATTATTAATC CAACAGTAAC AATCAAAATT ATAGGTCATC
AATGGTATTG GAGTTATGAA TATGGAGATA ATGCAAGTAA TTTAATAGAA
TTTGATAGTT ATATGGTTTA TGAACGAGAT TTAGCAGAAG GACAACTAAG
ATTATTAGAA GTAGATAATG CAATGGTAGT TCCAGTAAAA ACACATATTA
GATTAATAAT AACATCAGGA GATGTTTTAC ATAGTTGGGC GATTCCATCA
TTTGGAATAA AAGTAGATGC CGTAC----- -----TAAGC AATGGGCAGC
AGGTAACGGC ATTAAAGGCT TTACTGAATA ACATAATAGA ATACAGAGAC
ACTCATGCAA TATCCGAATT GGAAGGGAAA AAGCTACAAC AAGTAGCGGA
TGAACTAAGA CGGTTATATG AGAGGGAAGA TCAAATCGAA AAGGAAATAA
ATAAAATCTT AAGTAAGGCC TCTAAAAGAG CAGGGGGAGG TTGGATAAAA
GAAGAATAAT GAAACAAAAT TTAAAAAAAA CGGTTTTAAA AGCAGGATGG
ATACCAGGAA CGGAAACAGC TATTGCAAAA ATGGTTATAA GTATTTGTGT
TATCTTTGCA GGTTATTATA CATTATACTC TGCCTACGCA GAGTATAACC
AAATTGTAGA ACAAAATGCA CAAGCTGTTC TAAGCGAAGT AACAAGTAGT
AATATGCCCG TACCGCCATT AGAGAGTTTA ACTGATATTT TAGTAGCATC
TGAAAAATTA TCTCCGCAAA GTAAAGTAAA TTTTTTATTA GAGCATCAAA
CAAAGATAAT CTCCTTACTA AAGGGCTGTT GGGGGATACC TTATCTCCCG
ATCAAAAAGA GAATTTGAAG GAAATTGTAA ATTTTTTAAC AAAAAGAA

Translated Amino Acid Sequence VSK250

IGWVMGRILWRFSYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIP
SFTLLYAMDEIINPTVTIKIIGHQWYWSYEYGDNASNLIEFDSYMVYERDLAEGQLRLLE
VDNAMVVPVKTHIRLIITSGDVLHSWAIPSFGIKVDAV---

---SNGQQVTALKALLNNIIEYRDTHAISELEGKKLQQVADELRRLYEREDQIEKEINKI
LSKASKRAGGGWIKEE**nki*kkrf*kqdgyqerkqllqkwl*vfvlslqviihytlpt
qsitkl*nkmhklf*ak*qvvicpyrh*rv*lif**hlknylrkvk*ify*sikqr*spy
*ravggylisrskrefegnckffnkk

Homology VSK250 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VSK250 (VSK250Q) /CSM/VS/VSK2-C/VSK250Q.Seq.d/                       2070   0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/              1023   0.0
VFN289 (VFN289Q) /CSM/VF/VFN2-D/VFN289Q.Seq.d/                       1021   0.0
VHP858 (VHP858Q) /CSM/VH/VHP8-C/VHP858Q.Seq.d/                        731   0.0
VHN576 (VHN576Q) /CSM/VH/VHN5-D/VHN576Q.Seq.d/                        684   0.0
VHB602 (VHB602Q) /CSM/VH/VHB6-A/VHB602Q.Seq.d/                        684   0.0
VHJ852 (VHJ852Q) /CSM/VH/VHJ8-C/VHJ852Q.Seq.d/                        662   0.0
VHI649 (VHI649Q) /CSM/VH/VHI6-C/VHI649Q.Seq.d/                        615   e-175
VSE881 (VSE881Q) /CSM/VS/VSE8-D/VSE881Q.Seq.d/                        543   e-153
SHH491 (SHH491Q) /CSM/SH/SHH4-D/SHH491Q.Seq.d/                        529   e-149

Homology VSK250 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU270881) Dictyostelium discoideum vegetative cDNA clone:VS...   729   0.0    2
(AB000109) Dictyostelium discoideum mitochondrial DNA, compl...   488   0.0    11
(BJ435632) Dictyostelium discoideum cDNA clone:ddv27a24, 3' ...   583   0.0    2
(AU270880) Dictyostelium discoideum vegetative cDNA clone:VS...   942   0.0    1
(X81884) D.discoideum mitochondrial cox1 gene and cox2 gene.      488   0.0    2
(D50297) Dictyostelium discoideum mitochondrial cox1/2, ai2a...   488   0.0    2
(BJ446379) Dictyostelium discoideum cDNA clone:ddv62d16, 3' ...   575   0.0    3
(BJ437357) Dictyostelium discoideum cDNA clone:ddv34c02, 3' ...   583   0.0    2
(BJ445221) Dictyostelium discoideum cDNA clone:ddv58g19, 3' ...   583   0.0    2
(BJ442660) Dictyostelium discoideum cDNA clone:ddv50h14, 3' ...   561   0.0    2

Homology VSK250 vs Protein

Sequences producing significant alignments:                      (bits) Value


X81884_2(X81884|pid:none) D.discoideum mitochondrial cox1 gene a...   327   6e-88
(O21042) RecName: Full=Cytochrome c oxidase subunit 1+2;        ...   327   6e-88
DQ336395_6(DQ336395|pid:none) Dictyostelium citrinum mitochondri...   320   7e-86
EU275727_7(EU275727|pid:none) Dictyostelium fasciculatum strain ...   270   1e-70
AY700145_35(AY700145|pid:none) Polysphondylium pallidum mitochon...   268   4e-70
EU275726_6(EU275726|pid:none) Polysphondylium pallidum strain PN...   268   5e-70
AY267353_29(AY267353|pid:none) Chara vulgaris mitochondrion, com...   192   4e-47
AB437405_1(AB437405|pid:none) Haptoglossa zoospora mitochondrial...   191   6e-47
AF114794_21(AF114794|pid:none) Porphyra purpurea mitochondrion, ...   190   1e-46
JF501547_1(JF501547|pid:none) Funaria hygrometrica cytochrome c ...   190   1e-46

Homology VSK250 vs Genome