Dictyostelium discoideum cDNA Clone VSK240

Sequence VSK240

CCCCCCTCGA GGTCGACCCC GCGTCCGGTC TTCAATCATG GGTACTCCAT
ACCAAGGTAC TGCTCTCGCT GGTACTTGGG CTTCTATTGG TAGTGCTGTA
GGTGTTGGTT GTTCTGCAAA TGATGATCTC ACTGTTGATG GTGCCGCTTT
ATGGTTAAAA TCAATTCCAG CAGATAAAAG AGCTTTAGTT TATTATACAA
CTACTCAATA TAGTACTGGT TCTTTAATTA ATTATTGTAA TTTGGCTTCC
AATGCAGTCT TAGAATGGCC AAATGATGGT GTTGTTGATA ATGAGCATAC
TCCACTCGAA GGTGGTGTAT ATTTAAATAA CTTTAAAGAC TGGTGTCACT
CTGATGGTAT GCACTCACCA CAACAAACTA CAAATACTGA ATATAACAAA
GAAATGAGTT CCAACTCTGT TTGGTAAACT ACTTTGTATT ATTTTTTTTT
CTCTACAATA ATTGTAATAA AATCGATTTA TATTAAATTT ATTGTCACTT
TATAATTAAA AAAAAAA--- -------GTC ATTCAATCAA TGGGTACTCC
ATACCAAGGT ACTGCTCTCG CTGGTACTTG GGCTTCTATT GGTAGTGCTG
TAGGTGTTGG TTGTTCTGCA AATGATGATC TCACTGTTGA TGGTGCCGCT
TTATGGTTAA AATCAATTCC AGCAGATAAA AGAGCTTTAG TTTATTATAC
AACTACTCAA TATAGTACTG GTTCTTTAAT TAATTATTGT AATTTGGCTT
CCAATGCAGT CTTAGAATGG CCAAATGATG GTGTTGTTGA TAATGAGCAT
ACTCCACTCG AAGGTGGTGT ATATTTAAAT AACTTTAAAG ACTGGTGTCA
CTCTGATGGT ATGCACTCAC CACAACAAAC TACAAATACT GAATATAACA
AAGAAATGAG TTCCAACTCT GTTTGGTAAA CTACTTTGTA TTATTTTTTT
TTCTCTACAA TAATTGTAAT AAAATCGATT TATATTAAA

Translated Amino Acid Sequence VSK240

ppsrstprpvfnhgysiprycsrwylgfyw*ccrcwlfck**shc*wcrfmvkinssr*k
sfsllynysi*ywffn*ll*fgfqcslrmak*wcc***aystrrwcifk*l*rlvsl*wy
altttnyky*i*qrnefqlclvnyfvlffflynncnkidly*IYCHFIIKKK---

---VIQSMGTPYQGTALAGTWASIGSAVGVGCSANDDLTVDGAALWLKSIPADKRALVYY
TTTQYSTGSLINYCNLASNAVLEWPNDGVVDNEHTPLEGGVYLNNFKDWCHSDGMHSPQQ
TTNTEYNKEMSSNSVW*ttlyyfffstiiviksiyik

Homology VSK240 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VSK240 (VSK240Q) /CSM/VS/VSK2-B/VSK240Q.Seq.d/                        952   0.0
VSE772 (VSE772Q) /CSM/VS/VSE7-C/VSE772Q.Seq.d/                        868   0.0
VHQ437 (VHQ437Q) /CSM/VH/VHQ4-B/VHQ437Q.Seq.d/                        868   0.0
VHP806 (VHP806Q) /CSM/VH/VHP8-A/VHP806Q.Seq.d/                        868   0.0
VHP701 (VHP701Q) /CSM/VH/VHP7-A/VHP701Q.Seq.d/                        868   0.0
VHP580 (VHP580Q) /CSM/VH/VHP5-D/VHP580Q.Seq.d/                        868   0.0
VHP430 (VHP430Q) /CSM/VH/VHP4-B/VHP430Q.Seq.d/                        868   0.0
VHO841 (VHO841Q) /CSM/VH/VHO8-B/VHO841Q.Seq.d/                        868   0.0
VHO695 (VHO695Q) /CSM/VH/VHO6-D/VHO695Q.Seq.d/                        868   0.0
VHO642 (VHO642Q) /CSM/VH/VHO6-B/VHO642Q.Seq.d/                        868   0.0

Homology VSK240 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU270861) Dictyostelium discoideum vegetative cDNA clone:VS...   874   0.0    2
(BJ445671) Dictyostelium discoideum cDNA clone:ddv60b12, 3' ...   823   0.0    2
(BJ437146) Dictyostelium discoideum cDNA clone:ddv33h12, 3' ...   823   0.0    2
(BJ445677) Dictyostelium discoideum cDNA clone:ddv60c12, 3' ...   823   0.0    2
(BJ446642) Dictyostelium discoideum cDNA clone:ddv63j10, 3' ...   823   0.0    2
(BJ437032) Dictyostelium discoideum cDNA clone:ddv33a04, 3' ...   823   0.0    2
(BJ446509) Dictyostelium discoideum cDNA clone:ddv62o19, 3' ...   823   0.0    2
(BJ446204) Dictyostelium discoideum cDNA clone:ddv62b01, 3' ...   823   0.0    2
(BJ445878) Dictyostelium discoideum cDNA clone:ddv60m24, 3' ...   823   0.0    2
(BJ438992) Dictyostelium discoideum cDNA clone:ddv39h06, 3' ...   823   0.0    2

Homology VSK240 vs Protein

Sequences producing significant alignments:                      (bits) Value


AM920689_339(AM920689|pid:none) Xanthomonas campestris pv. campe...   122   3e-26
CP002789_4122(CP002789|pid:none) Xanthomonas campestris pv. raph...   120   1e-25
CP000050_316(CP000050|pid:none) Xanthomonas campestris pv. campe...   120   1e-25
AE008922_313(AE008922|pid:none) Xanthomonas campestris pv. campe...   120   1e-25
AM039952_339(AM039952|pid:none) Xanthomonas campestris pv. vesic...   119   2e-25

Homology VSK240 vs Genome