Homology VSJ569 vs Protein

Query= VSJ569 (VSJ569Q) /CSM/VS/VSJ5-C/VSJ569Q.Seq.d/
         (573 letters)

Database: nrp_B
           5,349,213 sequences; 1,732,582,204 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB016609_1(AB016609|pid:none) Dictyostelium discoideum gene for ...    65   3e-09
AC115599_1(AC115599|pid:none) Dictyostelium discoideum chromosom...    55   3e-06
AC116957_137(AC116957|pid:none) Dictyostelium discoideum chromos...    44   0.004
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...    33   8.6

>AB016609_1(AB016609|pid:none) Dictyostelium discoideum gene for
           gp138, complete cds.
          Length = 746

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 42/110 (38%), Positives = 54/110 (49%)
 Frame = +1

Query: 214 FNVSINVGNQVSNIVTFYLYKXXXXXXXXXXXXXXXXXXXXVTVTFDGEFGTTNSKIVFV 393
           F VS  VG Q SN VTFY +                      +V  +G FGT N+ +V V
Sbjct: 573 FTVSALVGGQSSNEVTFYYFNSINITEEKLVLNNTGG-----SVDINGSFGTNNTSLVSV 627

Query: 394 SINGIQCIVKSVTPQSLTISSYPSVPSVGKYQISINVGGLIFXDQIEYIK 543
           SING  C+V S T   LTI +YPS      Y +++NVGG      +EYI+
Sbjct: 628 SINGTNCLVTSYTNSKLTI-TYPSNQVGDNYVLTLNVGGYAVNLVVEYIE 676

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 1,247,115,734
Number of extensions: 21150680
Number of successful extensions: 40115
Number of sequences better than 10.0: 4
Number of HSP's gapped: 40110
Number of HSP's successfully gapped: 4
Length of query: 191
Length of database: 1,732,582,204
Length adjustment: 124
Effective length of query: 67
Effective length of database: 1,069,279,792
Effective search space: 71641746064
Effective search space used: 71641746064
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)




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