Homology VSJ569 vs Protein
Query= VSJ569 (VSJ569Q) /CSM/VS/VSJ5-C/VSJ569Q.Seq.d/
(573 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB016609_1(AB016609|pid:none) Dictyostelium discoideum gene for ... 65 3e-09
AC115599_1(AC115599|pid:none) Dictyostelium discoideum chromosom... 55 3e-06
AC116957_137(AC116957|pid:none) Dictyostelium discoideum chromos... 44 0.004
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso... 33 8.6
>AB016609_1(AB016609|pid:none) Dictyostelium discoideum gene for
gp138, complete cds.
Length = 746
Score = 64.7 bits (156), Expect = 3e-09
Identities = 42/110 (38%), Positives = 54/110 (49%)
Frame = +1
Query: 214 FNVSINVGNQVSNIVTFYLYKXXXXXXXXXXXXXXXXXXXXVTVTFDGEFGTTNSKIVFV 393
F VS VG Q SN VTFY + +V +G FGT N+ +V V
Sbjct: 573 FTVSALVGGQSSNEVTFYYFNSINITEEKLVLNNTGG-----SVDINGSFGTNNTSLVSV 627
Query: 394 SINGIQCIVKSVTPQSLTISSYPSVPSVGKYQISINVGGLIFXDQIEYIK 543
SING C+V S T LTI +YPS Y +++NVGG +EYI+
Sbjct: 628 SINGTNCLVTSYTNSKLTI-TYPSNQVGDNYVLTLNVGGYAVNLVVEYIE 676
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 1,247,115,734
Number of extensions: 21150680
Number of successful extensions: 40115
Number of sequences better than 10.0: 4
Number of HSP's gapped: 40110
Number of HSP's successfully gapped: 4
Length of query: 191
Length of database: 1,732,582,204
Length adjustment: 124
Effective length of query: 67
Effective length of database: 1,069,279,792
Effective search space: 71641746064
Effective search space used: 71641746064
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
Dictyostelium discoideum cDNA Project Home