Homology VSJ354 vs Protein
Query= VSJ354 (VSJ354Q) /CSM/VS/VSJ3-C/VSJ354Q.Seq.d/
(1129 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q54IK9) RecName: Full=Protein hook homolog; AltName: Full=DdHk3; 268 4e-70
BC048304_1(BC048304|pid:none) Homo sapiens hook homolog 3 (Droso... 54 2e-05
DQ104207_1(DQ104207|pid:none) Homo sapiens HOOK3-RET fusion prot... 54 2e-05
(Q8BIL5) RecName: Full=Protein Hook homolog 1; Short=mH... 53 3e-05
AK038941_1(AK038941|pid:none) Mus musculus adult male hypothalam... 53 3e-05
AK043870_1(AK043870|pid:none) Mus musculus 10 days neonate corte... 53 3e-05
BC090960_1(BC090960|pid:none) Mus musculus hook homolog 3 (Droso... 52 6e-05
AK054263_1(AK054263|pid:none) Mus musculus 2 days pregnant adult... 52 6e-05
(Q8BUK6) RecName: Full=Protein Hook homolog 3; Short=mH... 52 6e-05
(Q5ZJ27) RecName: Full=Protein Hook homolog 1; &AJ720607_1(AJ72... 51 1e-04
DQ895143_1(DQ895143|pid:none) Synthetic construct Homo sapiens c... 49 4e-04
BC107857_1(BC107857|pid:none) Homo sapiens hook homolog 1 (Droso... 49 4e-04
AB179475_1(AB179475|pid:none) Macaca fascicularis testis cDNA cl... 49 5e-04
(Q6NRB0) RecName: Full=Protein Hook homolog 2; &BC070852_1(BC07... 48 9e-04
AY810728_1(AY810728|pid:none) Schistosoma japonicum SJCHGC05441 ... 47 0.002
AP007161_844(AP007161|pid:none) Aspergillus oryzae RIB40 DNA, SC... 47 0.003
BC077466_1(BC077466|pid:none) Xenopus laevis hypothetical protei... 46 0.003
(Q6GQ73) RecName: Full=Protein Hook homolog 3; &BC072875_1(BC07... 45 0.006
(B0WPU9) RecName: Full=Protein hook; 45 0.008
DQ022376_1(DQ022376|pid:none) Danio rerio smooth muscle myosin h... 44 0.022
BC162152_1(BC162152|pid:none) Danio rerio myosin, heavy polypept... 44 0.022
(Q5TZ80) RecName: Full=Protein Hook homolog 1; &BX322665_5(BX32... 43 0.029
AL035416_1(AL035416|pid:none) Human DNA sequence from clone RP4-... 42 0.064
(B3MNR6) RecName: Full=Protein hook; 42 0.083
BC078243_1(BC078243|pid:none) Danio rerio im:7149072, mRNA (cDNA... 42 0.083
AM270009_10(AM270009|pid:none) Aspergillus niger contig An02c014... 41 0.11
AY346406_1(AY346406|pid:none) Streptococcus pyogenes strain JS26... 40 0.19
JN405389_1(JN405389|pid:none) Capsella rubella isolate Cr1209_26... 40 0.19
FJ174672_1(FJ174672|pid:none) Streptococcus pyogenes M protein (... 40 0.19
JF345263_1(JF345263|pid:none) Streptococcus pyogenes strain 70R ... 40 0.19
AY394508_1(AY394508|pid:none) Streptococcus pyogenes strain NS13... 40 0.19
AY394511_1(AY394511|pid:none) Streptococcus pyogenes strain NS14... 40 0.19
FJ531823_1(FJ531823|pid:none) Streptococcus pyogenes isolate B19... 40 0.19
AY394525_1(AY394525|pid:none) Streptococcus pyogenes strain NS19... 40 0.24
AY346398_1(AY346398|pid:none) Streptococcus pyogenes strain JS16... 40 0.24
AY394510_1(AY394510|pid:none) Streptococcus pyogenes strain NS14... 40 0.24
CP000056_1697(CP000056|pid:none) Streptococcus pyogenes MGAS6180... 40 0.24
AY394504_1(AY394504|pid:none) Streptococcus pyogenes strain NS11... 40 0.24
AY394546_1(AY394546|pid:none) Streptococcus pyogenes strain NS26... 40 0.24
BC136161_1(BC136161|pid:none) Xenopus tropicalis hypothetical pr... 40 0.24
FJ711061_1(FJ711061|pid:none) Streptococcus pyogenes strain GAP4... 40 0.24
AY394547_1(AY394547|pid:none) Streptococcus pyogenes strain NS27... 40 0.24
FJ531824_1(FJ531824|pid:none) Streptococcus pyogenes isolate B1 ... 40 0.24
(B4I5P7) RecName: Full=Protein hook; 40 0.32
(Q24185) RecName: Full=Protein hook; AltName: Full=dHK; &AE0141... 40 0.32
(B4Q9E6) RecName: Full=Protein hook; 40 0.32
CP001185_1435(CP001185|pid:none) Thermosipho africanus TCF52B, c... 40 0.32
JN405394_1(JN405394|pid:none) Capsella rubella isolate Cr75_2 AT... 39 0.41
AY916778_1(AY916778|pid:none) Danio rerio ELKS mRNA, complete cds. 39 0.41
AB033102_1(AB033102|pid:none) Homo sapiens mRNA for KIAA1276 pro... 39 0.41
BC171689_1(BC171689|pid:none) Danio rerio ELKS, mRNA (cDNA clone... 39 0.41
(Q9ULE4) RecName: Full=Protein FAM184B; 39 0.41
(B4PAF2) RecName: Full=Protein hook; 39 0.54
(B3NL60) RecName: Full=Protein hook; 39 0.54
CP002120_1197(CP002120|pid:none) Staphylococcus aureus subsp. au... 39 0.70
FR821777_1126(FR821777|pid:none) Staphylococcus aureus subsp. au... 39 0.70
CR760150_1(CR760150|pid:none) Xenopus tropicalis finished cDNA, ... 39 0.70
AM180355_2978(AM180355|pid:none) Clostridium difficile 630 compl... 38 0.92
CP001837_1551(CP001837|pid:none) Staphylococcus lugdunensis HKU0... 38 1.2
CP000939_2365(CP000939|pid:none) Clostridium botulinum B1 str. O... 38 1.2
DQ010937_1(DQ010937|pid:none) Streptococcus pyogenes M protein (... 38 1.2
FR773526_2458(FR773526|pid:none) Clostridium botulinum H04402 06... 38 1.2
CP002110_2089(CP002110|pid:none) Staphylococcus aureus subsp. au... 38 1.2
CP000728_2381(CP000728|pid:none) Clostridium botulinum F str. La... 38 1.2
HQ685430_1(HQ685430|pid:none) Drosophila orientacea isolate orie... 38 1.2
(Q9Z221) RecName: Full=Polyamine-modulated factor 1-binding prot... 38 1.2
FR870271_1611(FR870271|pid:none) Staphylococcus lugdunensis N920... 38 1.2
CP001581_2583(CP001581|pid:none) Clostridium botulinum A2 str. K... 38 1.2
BT071972_1(BT071972|pid:none) Salmo salar clone ssal-rgf-505-258... 38 1.2
CP001083_2502(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 38 1.2
FQ377874_218(FQ377874|pid:none) Mycoplasma mycoides subsp. capri... 37 1.6
AP012046_877(AP012046|pid:none) Tetragenococcus halophilus NBRC ... 37 1.6
EU841912_1(EU841912|pid:none) Xenopus laevis smooth muscle myosi... 37 1.6
(Q29N92) RecName: Full=Protein hook; 37 1.6
(B4G831) RecName: Full=Protein hook; 37 1.6
AB022212_4(AB022212|pid:none) Arabidopsis thaliana genomic DNA, ... 37 2.0
CP001996_1114(CP001996|pid:none) Staphylococcus aureus subsp. au... 37 2.0
X02165_1(X02165|pid:none) Mus Musculus partial mRNA for neurofil... 37 2.0
HQ685413_1(HQ685413|pid:none) Drosophila neotestacea isolate neo... 37 2.0
(P19527) RecName: Full=Neurofilament light polypeptide; ... 37 2.0
JI861630_1(JI861630|pid:none) TSA: Capra hircus 14606.1.Cahikidn... 37 2.0
M20480_1(M20480|pid:none) Mouse brain neurofilament-L mRNA, comp... 37 2.0
CP000726_2220(CP000726|pid:none) Clostridium botulinum A str. AT... 37 2.0
A21762(A21762) neurofilament triplet L protein - rat (fragment) ... 37 2.0
(A7X169) RecName: Full=MutS2 protein; &(P65495) RecName: Fu &(P... 37 2.0
(P47166) RecName: Full=Protein SGM1; AltName: Full=Slow growth o... 37 2.0
(Q2YXD1) RecName: Full=MutS2 protein; &AJ938182_1008(AJ938182|p... 37 2.0
(B4JAL5) RecName: Full=Protein hook; 37 2.0
BC055648_1(BC055648|pid:none) Danio rerio zgc:66419, mRNA (cDNA ... 37 2.0
(A5IS30) RecName: Full=MutS2 protein; &(A6U0W1) RecName: Fu &CP... 37 2.0
BC016436_1(BC016436|pid:none) Mus musculus neurofilament, light ... 37 2.0
CP002868_2284(CP002868|pid:none) Spirochaeta caldaria DSM 7334, ... 37 2.7
DQ010930_1(DQ010930|pid:none) Streptococcus pyogenes M protein (... 37 2.7
JW0094(JW0094)neurofilament protein-L - bovine 37 2.7
CR860427_1(CR860427|pid:none) Pongo abelii mRNA; cDNA DKFZp459N1... 37 2.7
CR861452_1(CR861452|pid:none) Pongo abelii mRNA; cDNA DKFZp459E2... 37 2.7
QFPGL(A91337;A90973;A34569;A02963)neurofilament triplet L protei... 37 2.7
FQ790233_591(FQ790233|pid:none) Mycoplasma suis strain KI_3806, ... 37 2.7
EU841911_1(EU841911|pid:none) Xenopus laevis smooth muscle myosi... 37 2.7
CP002114_980(CP002114|pid:none) Staphylococcus aureus subsp. aur... 37 2.7
CP001229_1223(CP001229|pid:none) Sulfurihydrogenibium azorense A... 37 2.7
B46024(B46024)neurofilament-L subunit - quail 37 2.7
EU637020_7(EU637020|pid:none) Philodina roseola peptidylprolyl i... 37 2.7
AK075003_1(AK075003|pid:none) Homo sapiens cDNA FLJ90522 fis, cl... 37 2.7
(Q4L5Y9) RecName: Full=Ribonuclease Y; Short=RNase Y; ... 37 2.7
(P02547) RecName: Full=Neurofilament light polypeptide; ... 37 2.7
(O61493) RecName: Full=Protein hook; &AF044926_1(AF044926|pid:n... 37 2.7
(Q02916) RecName: Full=Neurofilament light polypeptide; ... 37 2.7
CR859598_1(CR859598|pid:none) Pongo abelii mRNA; cDNA DKFZp459B2... 37 2.7
AB053468_1(AB053468|pid:none) Homo sapiens mRNA for ELKS beta, c... 36 3.5
AB029004_1(AB029004|pid:none) Homo sapiens mRNA for KIAA1081 pro... 36 3.5
GN102962_1(GN102962|pid:none) Sequence 7743 from Patent WO200903... 36 3.5
AE013599_4559(AE013599|pid:none) Drosophila melanogaster chromos... 36 3.5
FR824496_2(FR824496|pid:none) Albugo laibachii Nc14, genomic con... 36 3.5
CP002009_1054(CP002009|pid:none) Methanocaldococcus infernus ME,... 36 3.5
(Q9ZEH5) RecName: Full=MutS2 protein; Flags: Fragment; &AJ22348... 36 3.5
AE013599_4554(AE013599|pid:none) Drosophila melanogaster chromos... 36 3.5
AF022982_4(AF022982|pid:none) Caenorhabditis elegans cosmid T23B... 36 3.5
(Q6GHU1) RecName: Full=MutS2 protein; &BX571856_1092(BX571856|p... 36 3.5
U35816_4(U35816|pid:none) Drosophila melanogaster nonmuscle myos... 36 3.5
AE013599_4557(AE013599|pid:none) Drosophila melanogaster chromos... 36 3.5
AB015617_1(AB015617|pid:none) Homo sapiens ELKS mRNA, complete c... 36 3.5
AE013599_4553(AE013599|pid:none) Drosophila melanogaster chromos... 36 3.5
S61477(S61477;S65349)myosin II heavy chain, non-muscle - fruit f... 36 3.5
AE013599_4558(AE013599|pid:none) Drosophila melanogaster chromos... 36 3.5
(B4N1C2) RecName: Full=Protein hook; 36 3.5
U35816_3(U35816|pid:none) Drosophila melanogaster nonmuscle myos... 36 3.5
AE013599_4552(AE013599|pid:none) Drosophila melanogaster chromos... 36 3.5
U35816_2(U35816|pid:none) Drosophila melanogaster nonmuscle myos... 36 3.5
AK301768_1(AK301768|pid:none) Homo sapiens cDNA FLJ53232 complet... 36 4.6
CP002069_148(CP002069|pid:none) Methanohalobium evestigatum Z-73... 36 4.6
BC100229_1(BC100229|pid:none) Xenopus laevis hypothetical protei... 36 4.6
BC081274_1(BC081274|pid:none) Xenopus laevis hypothetical protei... 36 4.6
CP000108_116(CP000108|pid:none) Chlorobium chlorochromatii CaD3,... 36 4.6
(Q8MIT6) RecName: Full=Rho-associated protein kinase 1; ... 36 4.6
CP002546_1688(CP002546|pid:none) Planctomyces brasiliensis DSM 5... 36 4.6
CR382132_193(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 36 4.6
CP000061_184(CP000061|pid:none) Aster yellows witches'-broom phy... 36 4.6
AL662798_6(AL662798|pid:none) Human DNA sequence from clone XXba... 35 6.0
(P35418) RecName: Full=Paramyosin; AltName: Full=Antigen B; ... 35 6.0
(Q99MI1) RecName: Full=ELKS/Rab6-interacting/CAST family member ... 35 6.0
AY686637_1(AY686637|pid:none) Taenia solium paramyosin mRNA, com... 35 6.0
CP001291_927(CP001291|pid:none) Cyanothece sp. PCC 7424, complet... 35 6.0
CR759873_1(CR759873|pid:none) Human DNA sequence from clone DAAP... 35 6.0
AB001601_1(AB001601|pid:none) Homo sapiens DBP2 mRNA for ATP-dep... 35 6.0
DQ895906_1(DQ895906|pid:none) Synthetic construct Homo sapiens c... 35 6.0
BC172617_1(BC172617|pid:none) Synthetic construct Mus musculus c... 35 6.0
AK171291_1(AK171291|pid:none) Mus musculus NOD-derived CD11c +ve... 35 6.0
(Q8T305) RecName: Full=Paramyosin; &AJ439882_1(AJ439882|pid:none) 35 6.0
CR382132_100(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 35 6.0
(Q6PH08) RecName: Full=ERC protein 2; AltName: Full=CAZ-associat... 35 7.8
GU949034_1(GU949034|pid:none) Neslia paniculata clone Np3_AT4G27... 35 7.8
AY356531_1(AY356531|pid:none) Mus musculus CAST1/ERC2 splicing v... 35 7.8
CP001746_5187(CP001746|pid:none) Bacillus cereus biovar anthraci... 35 7.8
BC056760_1(BC056760|pid:none) Mus musculus ELKS/RAB6-interacting... 35 7.8
BC151000_1(BC151000|pid:none) Mus musculus angiomotin-like 1, mR... 35 7.8
L13723_1(L13723|pid:none) Taenia solium paramyosin (AgB) gene, c... 35 7.8
CP000919_1072(CP000919|pid:none) Streptococcus pneumoniae JJA, c... 35 7.8
FP929041_951(FP929041|pid:none) Eubacterium cylindroides T2-87 d... 35 7.8
CP001615_425(CP001615|pid:none) Exiguobacterium sp. AT1b, comple... 35 7.8
(Q8K3M6) RecName: Full=ERC protein 2; AltName: Full=CAZ-associat... 35 7.8
(P35417) RecName: Full=Paramyosin; &S37040(S37040) &Z21787_1(Z2... 35 7.8
AY356533_1(AY356533|pid:none) Mus musculus CAST1/ERC2 splicing v... 35 7.8
AB002376_1(AB002376|pid:none) Human mRNA for KIAA0378 gene, part... 35 7.8
AK220238_1(AK220238|pid:none) Mus musculus mRNA for mFLJ00155 pr... 35 7.8
AM422018_415(AM422018|pid:none) Candidatus Phytoplasma australie... 35 7.8
CP000918_1187(CP000918|pid:none) Streptococcus pneumoniae 70585,... 35 7.8
CP001047_113(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 35 7.8
(A2VDP1) RecName: Full=E3 ubiquitin-protein ligase BRE1A; ... 35 7.8
>(Q54IK9) RecName: Full=Protein hook homolog; AltName: Full=DdHk3;
Length = 734
Score = 268 bits (685), Expect = 4e-70
Identities = 137/162 (84%), Positives = 137/162 (84%)
Frame = +3
Query: 24 MIETSFIKWINSFKDLSNSIEDLKELSNGTIFNEICCQIAPKYFDIDSLRKDGLDNWIFR 203
MIETSFIKWINSFKDLSNSIEDLKELSNGTIFNEICCQIAPKYFDIDSLRKDGLDNWIFR
Sbjct: 1 MIETSFIKWINSFKDLSNSIEDLKELSNGTIFNEICCQIAPKYFDIDSLRKDGLDNWIFR 60
Query: 204 EENIKNIVERVDEFYIEEMGLNDQXXXXXXXXXXXXXXXXXXXXXXXXXGMAMESENNEA 383
EENIKNIVERVDEFYIEEMGLNDQ GMAMESENNEA
Sbjct: 61 EENIKNIVERVDEFYIEEMGLNDQISSINCEEIANENIDEIILLIEAILGMAMESENNEA 120
Query: 384 VIENILSLDQDTQNDLMVVVAKIQQSHQPNTVDNSKSFDKDG 509
VIENILSLDQDTQNDLMVVVAKIQQSHQPNTVDNSKSFDKDG
Sbjct: 121 VIENILSLDQDTQNDLMVVVAKIQQSHQPNTVDNSKSFDKDG 162
Score = 265 bits (677), Expect = 4e-69
Identities = 141/154 (91%), Positives = 141/154 (91%)
Frame = +3
Query: 630 LKRKLEESNLSLDENRKQLVELSQRPTTQSPGDIXXXXXXXXXXXXXDGLEGRLRAARNI 809
LKRKLEESNLSLDENRKQLVELSQRPTTQSPGDI DGLEGRLRAARNI
Sbjct: 580 LKRKLEESNLSLDENRKQLVELSQRPTTQSPGDIEKLENYENLLKENDGLEGRLRAARNI 639
Query: 810 IKDLREKHKSYSNQETQLATKDEVITKLEGLVKKKTDINEDLRKQLEEGREESQREINLM 989
IKDLREKHKSYSNQETQLATKDEVITKLEGLVKKKTDINEDLRKQLEEGREESQREINLM
Sbjct: 640 IKDLREKHKSYSNQETQLATKDEVITKLEGLVKKKTDINEDLRKQLEEGREESQREINLM 699
Query: 990 LSAFLKIGLEMEQVKIQNISSSKEPRSFLNKKRA 1091
LSAFLKIGLEMEQVKIQNISSSKEPRSFLNKKRA
Sbjct: 700 LSAFLKIGLEMEQVKIQNISSSKEPRSFLNKKRA 733
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 2,240,695,635
Number of extensions: 36543674
Number of successful extensions: 120024
Number of sequences better than 10.0: 169
Number of HSP's gapped: 119743
Number of HSP's successfully gapped: 170
Length of query: 376
Length of database: 1,732,582,204
Length adjustment: 133
Effective length of query: 243
Effective length of database: 1,021,136,875
Effective search space: 248136260625
Effective search space used: 248136260625
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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