Dictyostelium discoideum cDNA Clone VSJ354

Sequence VSJ354

AAAAATAATA AATAAAAAAA AATATGATAG AGACAAGTTT TATAAAATGG
ATAAATTCAT TTAAAGATTT ATCTAACTCT ATTGAAGATT TAAAAGAGTT
ATCAAATGGT ACTATATTTA ATGAAATTTG TTGCCAAATT GCACCAAAAT
ATTTTGATAT AGATTCATTA AGAAAAGATG GATTAGATAA TTGGATATTT
AGAGAAGAGA ATATTAAAAA TATAGTAGAA AGAGTTGATG AATTTTATAT
AGAAGAGATG GGATTAAACG ATCAAATATC ATCCATTAAT TGTGAAGAGA
TTGCAAACGA AAATATCGAT GAAATTATAT TATTGATTGA AGCAATACTT
GGAATGGCAA TGGAATCTGA AAATAATGAA GCTGTAATTG AAAATATTTT
ATCTTTAGAT CAAGATACTC AAAATGATTT AATGGTTGTT GTTGCAAAGA
TTCAACAATC ACATCAACCA AATACAGTAG ATAATAGTAA ATCATTTGAT
AAAGATGGAT CAATTTTATC ACAATCACCA AGTCAAAGTA ATAATAGTAT
TAGTAATAAT AATAATAATA ATAATATAGA TAGTAGT--- -------ATA
GAACTCAAGC TNACTCTGGT AAACAACCAT TAAAGAGAAA ACTCGAGGAA
TCTAATCTTA GTTTGGATGA AAATAGGAAA CAATTGGTCG AATTATCACA
AAGACCAACC ACTCAATCAC CAGGTGATAT TGAAAAACTT GAAAATTACG
AAAATCTTCT CAAGGAAAAT GATGGTTTAG AGGGTCGTTT AAGAGCTGCT
CGTAACATCA TTAAAGATCT TAGAGAAAAA CATAAATCTT ACTCAAATCA
AGAGACTCAA TTGGCCACCA AAGATGAAGT CATCACCAAA TTGGAAGGTT
TGGTCAAAAA GAAGACTGAT ATCAACGAAG ATTTAAGAAA ACAACTCGAA
GAAGGTAGAG AAGAATCTCA AAGAGAAATT AATTTAATGC TTTCAGCTTT
CTTAAAGATT GGTTTAGAAA TGGAACAAGT TAAAATTCAA AATATTTCAA
GTTCAAAAGA ACCAAGATCA TTTTTAAATA AAAAAAGAGC NATTAAAGAA
TTTATAAATA TATAATATAA TATAAATAA

Translated Amino Acid Sequence VSJ354

k**IKKNMIETSFIKWINSFKDLSNSIEDLKELSNGTIFNEICCQIAPKYFDIDSLRKDG
LDNWIFREENIKNIVERVDEFYIEEMGLNDQISSINCEEIANENIDEIILLIEAILGMAM
ESENNEAVIENILSLDQDTQNDLMVVVAKIQQSHQPNTVDNSKSFDKDGSILSQSPSQSN
NSISNNNNNNNIDSS---

---RTQAXSGKQPLKRKLEESNLSLDENRKQLVELSQRPTTQSPGDIEKLENYENLLKEN
DGLEGRLRAARNIIKDLREKHKSYSNQETQLATKDEVITKLEGLVKKKTDINEDLRKQLE
EGREESQREINLMLSAFLKIGLEMEQVKIQNISSSKEPRSFLNKKRAIKEFINI*ynin

Homology VSJ354 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VSJ354 (VSJ354Q) /CSM/VS/VSJ3-C/VSJ354Q.Seq.d/                       1019   0.0
VHI376 (VHI376Q) /CSM/VH/VHI3-D/VHI376Q.Seq.d/                        944   0.0
CHM408 (CHM408Q) /CSM/CH/CHM4-A/CHM408Q.Seq.d/                        858   0.0
VSI610 (VSI610Q) /CSM/VS/VSI6-A/VSI610Q.Seq.d/                        771   0.0
CHJ189 (CHJ189Q) /CSM/CH/CHJ1-D/CHJ189Q.Seq.d/                         40   0.072
AFN711 (AFN711Q) /CSM/AF/AFN7-A/AFN711Q.Seq.d/                         40   0.072
SSI626 (SSI626Q) /CSM/SS/SSI6-B/SSI626Q.Seq.d/                         38   0.28
SSF882 (SSF882Q) /CSM/SS/SSF8-D/SSF882Q.Seq.d/                         38   0.28
SSC311 (SSC311Q) /CSM/SS/SSC3-A/SSC311Q.Seq.d/                         38   0.28
SFD504 (SFD504Q) /CSM/SF/SFD5-A/SFD504Q.Seq.d/                         38   0.28

Homology VSJ354 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU269801) Dictyostelium discoideum vegetative cDNA clone:VS...  1023   0.0    1
(BJ423028) Dictyostelium discoideum cDNA clone:ddv47h19, 5' ...   944   0.0    1
(AU269802) Dictyostelium discoideum vegetative cDNA clone:VS...   940   0.0    1
(BJ382888) Dictyostelium discoideum cDNA clone:ddc46p02, 3' ...   848   0.0    1
(BJ368319) Dictyostelium discoideum cDNA clone:ddc46p02, 5' ...   815   0.0    1
(AU268958) Dictyostelium discoideum vegetative cDNA clone:VS...   771   0.0    1
(GR574544) CBXU2234.b1 CBXU Dictyostelium purpureum 6 hr veg...    68   4e-47  5
(GR569669) CBTF617.b1 CBTF Dictyostelium purpureum 12 hr veg...    68   4e-47  5
(GR568842) CBTF4154.b1 CBTF Dictyostelium purpureum 12 hr ve...    68   5e-47  5
(GR568843) CBTF4154.g1 CBTF Dictyostelium purpureum 12 hr ve...   121   2e-31  2

Homology VSJ354 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54IK9) RecName: Full=Protein hook homolog; AltName: Full=DdHk3;     268   4e-70
BC048304_1(BC048304|pid:none) Homo sapiens hook homolog 3 (Droso...    54   2e-05
DQ104207_1(DQ104207|pid:none) Homo sapiens HOOK3-RET fusion prot...    54   2e-05
(Q8BIL5) RecName: Full=Protein Hook homolog 1;          Short=mH...    53   3e-05
AK038941_1(AK038941|pid:none) Mus musculus adult male hypothalam...    53   3e-05
AK043870_1(AK043870|pid:none) Mus musculus 10 days neonate corte...    53   3e-05
BC090960_1(BC090960|pid:none) Mus musculus hook homolog 3 (Droso...    52   6e-05
AK054263_1(AK054263|pid:none) Mus musculus 2 days pregnant adult...    52   6e-05
(Q8BUK6) RecName: Full=Protein Hook homolog 3;          Short=mH...    52   6e-05
(Q5ZJ27) RecName: Full=Protein Hook homolog 1;  &AJ720607_1(AJ72...    51   1e-04

Homology VSJ354 vs Genome