Homology VSJ354 vs DNA
Query= VSJ354 (VSJ354Q) /CSM/VS/VSJ3-C/VSJ354Q.Seq.d/
(1129 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU269801) Dictyostelium discoideum vegetative cDNA clone:VS... 1023 0.0 1
(BJ423028) Dictyostelium discoideum cDNA clone:ddv47h19, 5' ... 944 0.0 1
(AU269802) Dictyostelium discoideum vegetative cDNA clone:VS... 940 0.0 1
(BJ382888) Dictyostelium discoideum cDNA clone:ddc46p02, 3' ... 848 0.0 1
(BJ368319) Dictyostelium discoideum cDNA clone:ddc46p02, 5' ... 815 0.0 1
(AU268958) Dictyostelium discoideum vegetative cDNA clone:VS... 771 0.0 1
(GR574544) CBXU2234.b1 CBXU Dictyostelium purpureum 6 hr veg... 68 4e-47 5
(GR569669) CBTF617.b1 CBTF Dictyostelium purpureum 12 hr veg... 68 4e-47 5
(GR568842) CBTF4154.b1 CBTF Dictyostelium purpureum 12 hr ve... 68 5e-47 5
(GR568843) CBTF4154.g1 CBTF Dictyostelium purpureum 12 hr ve... 121 2e-31 2
(GR574545) CBXU2234.g1 CBXU Dictyostelium purpureum 6 hr veg... 121 2e-31 2
(GR569670) CBTF617.g1 CBTF Dictyostelium purpureum 12 hr veg... 121 3e-31 2
(GR569144) CBTF4372.g1 CBTF Dictyostelium purpureum 12 hr ve... 121 6e-23 1
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 38 0.009 18
(AU268959) Dictyostelium discoideum vegetative cDNA clone:VS... 54 0.013 1
(AE017332) Mycoplasma hyopneumoniae 232, complete genome. 34 0.16 18
(AC013725) Homo sapiens BAC clone RP11-323F5 from 4, complet... 50 0.20 1
(DW421366) HHAGE021096 Human liver regeneration after partia... 50 0.20 1
(DB344942) Homo sapiens cDNA clone THYMU3006201, 3' end, mRN... 50 0.20 1
(AI859325) wm10a06.x1 NCI_CGAP_Ut4 Homo sapiens cDNA clone I... 50 0.20 1
(BU730057) UI-E-CK1-afj-c-21-0-UI.s1 UI-E-CK1 Homo sapiens c... 50 0.20 1
(BQ638565) hd25a06.y1 Human Retina cDNA (Un-normalized, unam... 50 0.20 1
(EL527625) EST_omor_eva_6778 omoreva mixed_tissue Osmerus mo... 44 0.22 2
(EL527624) EST_omor_eva_6777 omoreva mixed_tissue Osmerus mo... 44 0.22 2
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 34 0.26 17
(AC025153) Homo sapiens chromosome 12 clone RP11-289I2, WORK... 38 0.43 2
(AC024897) Homo sapiens 3 BAC RP11-505J9 (Roswell Park Cance... 38 0.43 2
(AC024991) Homo sapiens chromosome 3 clone RP11-177B6 map 3,... 38 0.44 2
(AC093000) Homo sapiens chromosome 3q clone RP11-177B6, WORK... 38 0.44 2
(AC211037) Solanum lycopersicum chromosome 6 clone C06HBa006... 36 0.46 2
(AR584244) Sequence 1 from patent US 6797466. 36 0.60 23
(AR271569) Sequence 1 from patent US 6503729. 36 0.60 23
(CP000716) Thermosipho melanesiensis BI429, complete genome. 40 0.61 17
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 36 0.69 20
(EJ044249) 1095454111598 Global-Ocean-Sampling_GS-26-01-01-1... 46 0.69 2
(DL268006) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS. 48 0.78 1
(DJ134455) Method for identification of useful proteins deri... 48 0.78 1
(HB146721) Sequence 5075 from Patent WO2006024951. 48 0.78 1
(HA143374) Sequence 5075 from Patent WO2006024892. 48 0.78 1
(FP102482) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.78 1
(FP015846) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.78 1
(EJ845991) 1093017856074 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.78 1
(EJ740627) 1092962013998 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.78 1
(EJ654724) 1092955002074 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.78 1
(EK243135) 1095460241681 Global-Ocean-Sampling_GS-31-01-01-1... 44 0.81 2
(AE000783) Borrelia burgdorferi B31, complete genome. 36 0.82 16
(EJ031662) 1095454048797 Global-Ocean-Sampling_GS-26-01-01-1... 46 0.87 2
(EG999163) 031118NL19EMM00032D11 NL19EMM Neotyphodium lolii ... 34 0.99 4
(BD061520) Genome DNA of symbiotic bacteria of aphid. 34 1.1 17
(AR409405) Sequence 1 from patent US 6632935. 34 1.1 17
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 34 1.1 17
(CP001158) Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisu... 34 1.1 17
(FM864216) Mycoplasma conjunctivae HRC/581T complete genome. 32 1.4 18
(CP001205) Borrelia burgdorferi ZS7, complete genome. 36 1.5 15
(AC217249) Solanum lycopersicum chromosome 12 clone SL_EcoRI... 34 1.5 7
(BX324215) Zebrafish DNA sequence from clone DKEY-42L16 in l... 32 1.7 11
(CT009668) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 1.7 11
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g... 40 1.7 22
(AC142327) Pan troglodytes BAC clone RP43-22L22 from chromos... 38 1.7 4
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 34 1.8 13
(AM467632) Vitis vinifera contig VV78X147447.14, whole genom... 38 1.9 3
(CN820322) HRO4418_A10_A20ZS5 Lib AA069E1X Avena sativa cv. ... 30 2.2 4
(AC061989) Homo sapiens chromosome 8 clone RP11-257N13 map 8... 38 2.2 8
(DX017582) KBrB010B15R KBrB, Brassica rapa BamHI BAC library... 44 2.3 2
(AC216207) MACACA MULATTA BAC clone CH250-396L11 from chromo... 40 2.5 3
(DX074447) KBrB085B24F KBrB, Brassica rapa BamHI BAC library... 44 2.7 2
(DX047061) KBrB048O22R KBrB, Brassica rapa BamHI BAC library... 44 2.8 2
(CP001161) Buchnera aphidicola str. 5A (Acyrthosiphon pisum)... 34 2.8 16
(BX248402) Zebrafish DNA sequence from clone CH211-226P14 in... 46 3.1 1
(AC162985) Bos taurus clone CH240-123I20, WORKING DRAFT SEQU... 46 3.1 1
(AC160916) Rhinolophus ferrumequinum clone VMRC7-62G19, WORK... 46 3.1 1
(AC160794) Bos taurus clone CH240-86I11, WORKING DRAFT SEQUE... 46 3.1 1
(AC156784) Rhinolophus ferrumequinum clone VMRC7-400J24, WOR... 46 3.1 1
(AC152575) Bos taurus clone CH240-14A22, *** SEQUENCING IN P... 46 3.1 1
(AC125549) Rattus norvegicus clone CH230-7B11, *** SEQUENCIN... 46 3.1 1
(AC115507) Rattus norvegicus clone CH230-330C22, WORKING DRA... 46 3.1 1
(AC222259) Bos taurus clone CH240-413H19, WORKING DRAFT SEQU... 46 3.1 1
(AC169552) Bos taurus clone CH240-225O21, WORKING DRAFT SEQU... 46 3.1 1
(ER602811) 1093016254909 Global-Ocean-Sampling_GS-36-01-01-2... 46 3.1 1
(EJ969739) 1093022072398 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.1 1
(EJ937594) 1093018847174 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.1 1
(BH793764) ME_MBa0001M05f Manihot esculenta Manihot esculent... 46 3.1 1
(CT843825) Oryza sativa Indica Group EST sequence:CONTIG8104. 46 3.1 1
(AW872928) hq20a09.x1 NCI_CGAP_Adr1 Homo sapiens cDNA clone ... 46 3.1 1
(FC053998) CATU8100.fwd CATU Aureococcus anophagefferens Sin... 46 3.1 1
(FC052915) CATU7328.fwd CATU Aureococcus anophagefferens Sin... 46 3.1 1
(FC051335) CATU6341.fwd CATU Aureococcus anophagefferens Sin... 46 3.1 1
(FC049160) CATU4955.fwd CATU Aureococcus anophagefferens Sin... 46 3.1 1
(FC048852) CATU4750.fwd CATU Aureococcus anophagefferens Sin... 46 3.1 1
(FC048839) CATU4741.fwd CATU Aureococcus anophagefferens Sin... 46 3.1 1
(FC048157) CATU4317.fwd CATU Aureococcus anophagefferens Sin... 46 3.1 1
(FC046083) CATU40726.fwd CATU Aureococcus anophagefferens Si... 46 3.1 1
(FC043948) CATU39082.fwd CATU Aureococcus anophagefferens Si... 46 3.1 1
(FC043061) CATU38533.fwd CATU Aureococcus anophagefferens Si... 46 3.1 1
(FC040664) CATU37061.fwd CATU Aureococcus anophagefferens Si... 46 3.1 1
(FC039172) CATU36145.fwd CATU Aureococcus anophagefferens Si... 46 3.1 1
(FC039124) CATU36117.fwd CATU Aureococcus anophagefferens Si... 46 3.1 1
(FC034166) CATU31986.fwd CATU Aureococcus anophagefferens Si... 46 3.1 1
(FC032902) CATU30831.fwd CATU Aureococcus anophagefferens Si... 46 3.1 1
(FC029782) CATU28931.fwd CATU Aureococcus anophagefferens Si... 46 3.1 1
(FC022893) CATU23783.fwd CATU Aureococcus anophagefferens Si... 46 3.1 1
(FC018290) CATU20254.fwd CATU Aureococcus anophagefferens Si... 46 3.1 1
(FC016802) CATU18695.fwd CATU Aureococcus anophagefferens Si... 46 3.1 1
(FC015655) CATU17958.fwd CATU Aureococcus anophagefferens Si... 46 3.1 1
(FC013254) CATU16376.fwd CATU Aureococcus anophagefferens Si... 46 3.1 1
(FC012986) CATU16185.fwd CATU Aureococcus anophagefferens Si... 46 3.1 1
(AJ235270) Rickettsia prowazekii strain Madrid E, complete g... 36 3.2 7
(EK340859) 1095467060785 Global-Ocean-Sampling_GS-31-01-01-1... 40 3.2 2
(CR628323) Zebrafish DNA sequence from clone DKEY-36G24 in l... 38 3.3 6
(EK586837) 1095522098235 Global-Ocean-Sampling_GS-32-01-01-1... 36 3.4 2
(AC040917) Homo sapiens chromosome 8, clone RP11-1M21, compl... 38 3.6 6
(AC235669) Medicago truncatula clone mth2-58k20, WORKING DRA... 42 4.8 8
(EG958403) AU_Ich_006A_G07 Whole organism normalized cDNA li... 34 4.8 2
(AE015450) Mycoplasma gallisepticum strain R complete genome. 38 5.3 14
(AC024713) Homo sapiens chromosome 21 clone RP11-170F21, WOR... 34 5.5 7
(ER865762) PPTHJ31TF Solanum tuberosum RHPOTKEY BAC ends Sol... 34 5.6 2
(GC698049) Sequence 13294 from patent US 6812339. 34 5.6 2
(AC104652) Homo sapiens BAC clone RP11-273F23 from 4, comple... 42 5.7 3
(CP001080) Sulfurihydrogenibium sp. YO3AOP1, complete genome. 36 5.7 23
(AC233289) Homo sapiens BAC clone RP11-395M1 from chromosome... 32 5.7 2
(AC219764) Bos taurus clone CH240-323J5, WORKING DRAFT SEQUE... 34 5.7 2
(AC092129) Homo sapiens chromosome 16 clone RP11-140O8, comp... 34 5.7 2
(FP325225) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 5.7 2
(EK044681) 1092959542549 Global-Ocean-Sampling_GS-31-01-01-1... 34 5.8 3
(AC092125) Homo sapiens chromosome 16 clone RP11-109D24, com... 34 5.8 2
(AC010652) Homo sapiens chromosome 16 clone RP11-415E16, WOR... 34 5.8 2
(AC192842) Pan troglodytes BAC clone CH251-43I12 from chromo... 32 5.8 2
(AC162073) Bos taurus clone CH240-111I24, WORKING DRAFT SEQU... 34 5.8 2
(FP016079) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 5.8 2
(AL773542) Zebrafish DNA sequence from clone CH211-174L22. 34 5.8 2
(AC192939) Pan troglodytes BAC clone CH251-344D5 from chromo... 32 5.8 2
(AC197193) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 36 5.8 5
(BX640476) Zebrafish DNA sequence from clone DKEY-57C9 in li... 34 5.9 2
(AC235911) Glycine max strain Williams 82 clone GM_WBc0218O2... 34 6.2 8
(AC189366) Brassica rapa subsp. pekinensis clone KBrB046G20,... 40 6.3 6
(AL442070) Human DNA sequence from clone RP11-468C24 on chro... 32 6.4 2
(AE017197) Rickettsia typhi str. Wilmington complete genome. 38 6.8 22
(CP000312) Clostridium perfringens SM101, complete genome. 42 6.9 17
(DC205005) Plasmodium berghei strain ANKA cDNA clone:MG00453... 34 7.0 2
(AC216648) Solanum lycopersicum chromosome 6 clone C06HBa009... 36 7.2 5
(AC162038) Mus musculus 6 BAC RP24-576J4 (Roswell Park Cance... 40 7.3 2
(AC115953) Mus musculus chromosome 6 clone RP24-576J4 map 6,... 40 7.4 2
(AL161559) Arabidopsis thaliana DNA chromosome 4, contig fra... 42 7.6 4
(CU571105) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 7.6 5
(FH684811) CHO_OF5073xd03r1.ab1 CHO_OF5 Nicotiana tabacum ge... 32 7.7 2
(AL032608) H.sapiens STS from genomic clone 988E8. 32 7.9 2
(GC738506) Sequence 53751 from patent US 6812339. 34 7.9 2
(GC738505) Sequence 53750 from patent US 6812339. 34 7.9 2
(AC155026) Bos taurus clone CH240-32H23, WORKING DRAFT SEQUE... 34 7.9 5
(FP013542) Brassica napus GSS, clone JBnB089M03, end read, p... 32 8.0 2
(AC160737) Bos taurus clone CH240-82G2, WORKING DRAFT SEQUEN... 40 8.1 6
(AC224857) Bos taurus clone CH240-474L6, WORKING DRAFT SEQUE... 42 8.2 6
(EG965507) AU_Ich_026B_C06 Whole organism normalized cDNA li... 34 8.3 2
(EU168191) Heterosigma akashiwo strain CCMP 452 chloroplast,... 36 8.3 9
(Z69646) Caenorhabditis elegans Cosmid F57C7. 34 8.6 4
(CU462852) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 9.0 4
(AC152126) Dasypus novemcinctus clone VMRC5-122P15, WORKING ... 38 9.3 6
(CZ771204) OC__Ba0128J07.r OC__Ba Oryza coarctata genomic cl... 40 9.3 2
(ED958404) OA_CBa0146M04.r OA_CBa Oryza australiensis genomi... 40 9.5 2
(AL451071) Human chromosome 14 DNA sequence BAC R-779M2 of l... 36 9.8 5
(BU462569) 603369212F1 CSEQRBN19 Gallus gallus cDNA clone Ch... 40 9.9 2
>(AU269801) Dictyostelium discoideum vegetative cDNA clone:VSJ354,
5' end single read.
Length = 587
Score = 1023 bits (516), Expect = 0.0
Identities = 516/516 (100%)
Strand = Plus / Plus
Query: 23 tatgatagagacaagttttataaaatggataaattcatttaaagatttatctaactctat 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 tatgatagagacaagttttataaaatggataaattcatttaaagatttatctaactctat 82
Query: 83 tgaagatttaaaagagttatcaaatggtactatatttaatgaaatttgttgccaaattgc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 tgaagatttaaaagagttatcaaatggtactatatttaatgaaatttgttgccaaattgc 142
Query: 143 accaaaatattttgatatagattcattaagaaaagatggattagataattggatatttag 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 accaaaatattttgatatagattcattaagaaaagatggattagataattggatatttag 202
Query: 203 agaagagaatattaaaaatatagtagaaagagttgatgaattttatatagaagagatggg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 agaagagaatattaaaaatatagtagaaagagttgatgaattttatatagaagagatggg 262
Query: 263 attaaacgatcaaatatcatccattaattgtgaagagattgcaaacgaaaatatcgatga 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 attaaacgatcaaatatcatccattaattgtgaagagattgcaaacgaaaatatcgatga 322
Query: 323 aattatattattgattgaagcaatacttggaatggcaatggaatctgaaaataatgaagc 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aattatattattgattgaagcaatacttggaatggcaatggaatctgaaaataatgaagc 382
Query: 383 tgtaattgaaaatattttatctttagatcaagatactcaaaatgatttaatggttgttgt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtaattgaaaatattttatctttagatcaagatactcaaaatgatttaatggttgttgt 442
Query: 443 tgcaaagattcaacaatcacatcaaccaaatacagtagataatagtaaatcatttgataa 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgcaaagattcaacaatcacatcaaccaaatacagtagataatagtaaatcatttgataa 502
Query: 503 agatggatcaattttatcacaatcaccaagtcaaag 538
||||||||||||||||||||||||||||||||||||
Sbjct: 503 agatggatcaattttatcacaatcaccaagtcaaag 538
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,515,550,902
Number of extensions: 96177206
Number of successful extensions: 8308865
Number of sequences better than 10.0: 161
Length of query: 1129
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1105
Effective length of database: 104,103,628,548
Effective search space: 115034509545540
Effective search space used: 115034509545540
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home