Homology VSJ135 vs Protein
Query= VSJ135 (VSJ135Q) /CSM/VS/VSJ1-B/VSJ135Q.Seq.d/
(1152 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ336395_37(DQ336395|pid:none) Dictyostelium citrinum mitochondr... 110 2e-22
(O21033) RecName: Full=60S ribosomal protein L14, mitochondrial;... 47 0.003
EU275727_34(EU275727|pid:none) Dictyostelium fasciculatum strain... 43 0.029
AP012048_821(AP012048|pid:none) Arcobacter sp. L DNA, complete g... 42 0.065
CP000962_194(CP000962|pid:none) Clostridium botulinum A3 str. Lo... 41 0.11
CP001083_198(CP001083|pid:none) Clostridium botulinum Ba4 str. 6... 41 0.15
FN424190_34(FN424190|pid:none) Paramecium caudatum complete mito... 40 0.25
FN538970_2250(FN538970|pid:none) Clostridium difficile CD196 com... 40 0.32
AY138501_1(AY138501|pid:none) Plasmodium falciparum normocyte bi... 40 0.32
CP001083_1630(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 40 0.32
AY138503_1(AY138503|pid:none) Plasmodium falciparum normocyte bi... 40 0.32
AY138502_1(AY138502|pid:none) Plasmodium falciparum normocyte bi... 40 0.32
AE009951_180(AE009951|pid:none) Fusobacterium nucleatum subsp. n... 40 0.32
AF312917_1(AF312917|pid:none) Plasmodium falciparum reticulocyte... 40 0.32
(Q8IDX6) RecName: Full=Reticulocyte-binding protein 2 homolog a;... 40 0.32
AY138499_1(AY138499|pid:none) Plasmodium falciparum normocyte bi... 40 0.32
AF312916_1(AF312916|pid:none) Plasmodium falciparum reticulocyte... 40 0.32
GU220361_9(GU220361|pid:none) Escherichia coli serogroup O161 O-... 39 0.55
AM412317_199(AM412317|pid:none) Clostridium botulinum A str. ATC... 39 0.55
DQ336395_39(DQ336395|pid:none) Dictyostelium citrinum mitochondr... 39 0.55
JF760210_6(JF760210|pid:none) Mnemiopsis leidyi mitochondrion, c... 39 0.72
CP002118_688(CP002118|pid:none) Clostridium acetobutylicum EA 20... 39 0.72
CP001581_200(CP001581|pid:none) Clostridium botulinum A2 str. Ky... 38 0.94
AP009180_48(AP009180|pid:none) Candidatus Carsonella ruddii PV D... 38 0.94
CP002161_83(CP002161|pid:none) Candidatus Zinderia insecticola C... 38 1.2
CP002219_1025(CP002219|pid:none) Caldicellulosiruptor hydrotherm... 37 1.6
CP000685_2154(CP000685|pid:none) Flavobacterium johnsoniae UW101... 37 1.6
CP002160_2342(CP002160|pid:none) Clostridium cellulovorans 743B,... 37 2.1
AF222718_7(AF222718|pid:none) Chrysodidymus synuroideus mitochon... 37 2.7
AM412317_1290(AM412317|pid:none) Clostridium botulinum A str. AT... 37 2.7
AY700145_15(AY700145|pid:none) Polysphondylium pallidum mitochon... 37 2.7
T23891(T23891) hypothetical protein R04B5.7 - Caenorhabditis ele... 30 2.9
AE017198_31(AE017198|pid:none) Lactobacillus johnsonii NCC 533, ... 36 3.6
FN538970_526(FN538970|pid:none) Clostridium difficile CD196 comp... 36 3.6
AY166677_1(AY166677|pid:none) Plasmodium reichenowi reticulocyte... 36 3.6
JF770850_1(JF770850|pid:none) Phytophthora syringae isolate P103... 36 3.6
FR668087_564(FR668087|pid:none) Mycoplasma leachii 99/014/6 comp... 36 3.6
CP002108_590(CP002108|pid:none) Mycoplasma leachii PG50 clone MU... 36 3.6
CP000361_1232(CP000361|pid:none) Arcobacter butzleri RM4018, com... 36 4.7
JF770582_1(JF770582|pid:none) Phytophthora cinnamomi isolate P10... 35 6.1
AF533700_1(AF533700|pid:none) Plasmodium falciparum 3D7 normocyt... 35 6.1
AE001437_3373(AE001437|pid:none) Clostridium acetobutylicum ATCC... 35 6.1
JF770581_1(JF770581|pid:none) Phytophthora cinnamomi isolate P10... 35 6.1
HQ704803_15(HQ704803|pid:none) Organic Lake phycodnavirus 2 geno... 35 6.1
(P15631) RecName: Full=Movement protein; Short=Mov; Alt... 35 6.1
AL844503_21(AL844503|pid:none) Plasmodium falciparum 3D7 chromos... 35 6.1
CP001490_15(CP001490|pid:none) Borrelia burgdorferi 94a plasmid ... 35 6.1
GQ332427_5(GQ332427|pid:none) Wellcomia siamensis mitochondrion,... 35 8.0
CP002551_718(CP002551|pid:none) Methanobacterium sp. AL-21, comp... 35 8.0
JF770849_1(JF770849|pid:none) Phytophthora sulawesiensis isolate... 35 8.0
EF494740_15(EF494740|pid:none) Blastocystis sp. NandII mitochond... 35 8.0
>DQ336395_37(DQ336395|pid:none) Dictyostelium citrinum mitochondrion,
complete genome.
Length = 1775
Score = 110 bits (274), Expect = 2e-22
Identities = 71/163 (43%), Positives = 78/163 (47%)
Frame = +1
Query: 1 KDRELRMSMNGXXXXXXXXXXXXMRVYLKKSIYKRTDIRAGLLRIXXXXXXXXXXXXXXX 180
K R L +S MRVYLKKS+YKRT+IR GL R+
Sbjct: 1485 KQRHLSISNQSKSKLSKFLLYLLMRVYLKKSLYKRTNIRKGLRRLKQTSTKNQLAVRLKI 1544
Query: 181 XERDLVDDIKGITSKSKKYXXXXXXXXXXXXXXXXXXXXXXANILTXXXXXXXXXXXXXX 360
+ L KGITS+SKKY I T
Sbjct: 1545 LGKHLKRFTKGITSQSKKYIGAVKKTILIKVLIKVLRSLLQTQIRTKKDAKRRRKIKEII 1604
Query: 361 XXFLYPLLITKRQIQKVRLRKKNKIYLLMAQIFLYNIKQLVVS 489
FLYPLLI KRQIQKVRLRKKNKIYLLMAQIFLYN+KQLV S
Sbjct: 1605 KIFLYPLLINKRQIQKVRLRKKNKIYLLMAQIFLYNVKQLVTS 1647
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 1,632,648,583
Number of extensions: 24698974
Number of successful extensions: 74882
Number of sequences better than 10.0: 51
Number of HSP's gapped: 74697
Number of HSP's successfully gapped: 53
Length of query: 384
Length of database: 1,732,582,204
Length adjustment: 134
Effective length of query: 250
Effective length of database: 1,015,787,662
Effective search space: 253946915500
Effective search space used: 253946915500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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