Dictyostelium discoideum cDNA Clone VSJ135

Sequence VSJ135

AAAGATCGAG AATTAAGAAT GTCAATGAAT GGTAAAAGTA AATTAAGTAA
ATTTTTACTA TATTTATTAA TGCGAGTATA TTTAAAAAAA AGTATTTATA
AAAGAACCGA TATCAGAGCA GGATTATTAA GAATAAAAAA AGCACAGCAA
ACGAAAAAAT TAGCACTAAA ATTAAAATTA TTAGAAAGGG ATTTAGTCGA
TGATATAAAA GGAATCACAA GTAAATCAAA AAAATATATA GGAGTGGTAA
AAAAAACAAT ATTAATAAAA GTCTTAATAA AAGTCTTAAG AAGTTTATTA
AAAGCAAATA TATTAACAAA AAAAGAAGCG AAAAGAAGAC GTAAAATAAA
AGAGTTAATA AAAATATTTT TATATCCATT ATTAATAACG AAAAGACAAA
TACAAAAAGT AAGATTAAGA AAAAAAAATA AAATATATTT ATTAATGGCT
CAAATATTTT TATACAATAT AAAACAATTA GTAGTAAGT- ---------A
ATAGGAACAC GATTAACAGG AGTAGTATTT AAAGAAGTAC AACGAACGGG
ATTATTAAAA AATGTATCAA TATCAAAATA TATAATATAA TGGATAATTT
ACAAACCTAT AAATTAAGAT TATTAGATAA ATATGTATTA AATAAATGTA
TGAGTTTAAA TAGAAGCAAT ACAAGTACAA TAGCATTAGA TCATGTAAAT
ATAAAAATGA ATTATAGAAA GAAAAAAAAA GAAGTGTATC AAATGATAGA
ATTAATAACA TTATTTGAAC AAATAACAGG AGAAAAACCA TTGATAAAAT
TAAATGAAAG TACTGAAAAA AATAATGTAG TAAAATTAGA AGATTTTAAA
TTAGCAGTAA GATTGCATAA GCAGAAAGCA AAGTATTTTT TAAATGCATT
GTGTTATGTA GGATTAGGAG AAAGAAAATA TTTAACATTA AAAGAAGAAA
ATAATATCGA TTTAGCGCAA TTAAAATTAT CTTATAGATA TAAAAATTTA
AAAATATTTA GACCAATACT AATAAGAAAA GATATGAATT TAGAAGCAAG
ATTAGCAATA GATATCCAAT ATAAAACAAT AGGAATAAAT AATGGACAAT
TAACAAAATA TAAATTTTAT TTAGGAAAAA AAACGAATTT AGAATTACAG
NA

Translated Amino Acid Sequence VSJ135

KDRELRMSMNGKSKLSKFLLYLLMRVYLKKSIYKRTDIRAGLLRIKKAQQTKKLALKLKL
LERDLVDDIKGITSKSKKYIGVVKKTILIKVLIKVLRSLLKANILTKKEAKRRRKIKELI
KIFLYPLLITKRQIQKVRLRKKNKIYLLMAQIFLYNIKQLVVS---

---IGTRLTGVVFKEVQRTGLLKNVSISKYII*wiiykpin*dy*inmy*inv*v*ieai
qvq*h*im*i*k*iierkkkkcik**n**hylnk*qeknh**n*mkvlkkim**n*kiln
*q*dcisrkqsif*mhcvm*d*ekeni*h*kkkiisi*rn*nylidiki*kyldqy**ek
i*i*kqd*q*isnikq*e*imdn*qninfi*ekkri*nyx

Homology VSJ135 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VSJ135 (VSJ135Q) /CSM/VS/VSJ1-B/VSJ135Q.Seq.d/                       1302   0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/              1142   0.0
FC-AD13 (FC-AD13Q) /CSM/FC/FC-AD/FC-AD13Q.Seq.d/                      557   e-157
FC-AT09 (FC-AT09Q) /CSM/FC/FC-AT/FC-AT09Q.Seq.d/                      541   e-153
VSH425 (VSH425Q) /CSM/VS/VSH4-B/VSH425Q.Seq.d/                        371   e-101
VSH125 (VSH125Q) /CSM/VS/VSH1-B/VSH125Q.Seq.d/                        343   4e-93
VSC710 (VSC710Q) /CSM/VS/VSC7-A/VSC710Q.Seq.d/                        301   1e-80
VSD628 (VSD628Q) /CSM/VS/VSD6-B/VSD628Q.Seq.d/                        287   2e-76
FC-AB13 (FC-AB13Q) /CSM/FC/FC-AB/FC-AB13Q.Seq.d/                      283   3e-75
VSH546 (VSH546Q) /CSM/VS/VSH5-B/VSH546Q.Seq.d/                        216   6e-55

Homology VSJ135 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AB000109) Dictyostelium discoideum mitochondrial DNA, compl...   440   0.0    9
(AU269460) Dictyostelium discoideum vegetative cDNA clone:VS...   440   0.0    5
(D63523) Dictyostelium discoideum mitochondrial rpl16, rpl14...   440   0.0    5
(AU284252) Dictyostelium discoideum gamete cDNA clone:FC-AD1...   258   e-165  6
(AU284409) Dictyostelium discoideum gamete cDNA clone:FC-AT0...   440   e-153  2
(DQ336395) Dictyostelium citrinum mitochondrion, complete ge...    92   e-118  10
(AU269459) Dictyostelium discoideum vegetative cDNA clone:VS...   165   e-109  4
(D21196) Dictyostelium discoideum mitochondrial DNA, partial...   165   e-105  4
(AU267428) Dictyostelium discoideum vegetative cDNA clone:VS...   365   3e-96  1
(AU266943) Dictyostelium discoideum vegetative cDNA clone:VS...   210   7e-87  3

Homology VSJ135 vs Protein

Sequences producing significant alignments:                      (bits) Value


DQ336395_37(DQ336395|pid:none) Dictyostelium citrinum mitochondr...   110   2e-22
(O21033) RecName: Full=60S ribosomal protein L14, mitochondrial;...    47   0.003
EU275727_34(EU275727|pid:none) Dictyostelium fasciculatum strain...    43   0.028
CP000962_194(CP000962|pid:none) Clostridium botulinum A3 str. Lo...    41   0.11
CP001083_198(CP001083|pid:none) Clostridium botulinum Ba4 str. 6...    41   0.14
FN424190_34(FN424190|pid:none) Paramecium caudatum complete mito...    40   0.24
FN538970_2250(FN538970|pid:none) Clostridium difficile CD196 com...    40   0.31
AY138501_1(AY138501|pid:none) Plasmodium falciparum normocyte bi...    40   0.31
CP001083_1630(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    40   0.31
AY138503_1(AY138503|pid:none) Plasmodium falciparum normocyte bi...    40   0.31

Homology VSJ135 vs Genome