Homology VSI490 vs Protein
Query= VSI490 (VSI490Q) /CSM/VS/VSI4-D/VSI490Q.Seq.d/
(860 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q86IV5) RecName: Full=Countin-1; Flags: Precursor; &AC116986_1... 335 e-110
AF140780_1(AF140780|pid:none) Dictyostelium discoideum countin g... 335 e-109
(Q86HV8) RecName: Full=Countin-3; Flags: Precursor; &AB211530_1... 178 7e-51
(Q8WSR7) RecName: Full=Countin-2; Flags: Precursor; &AB067573_1... 158 3e-37
(Q554K2) RecName: Full=Countin-like protein; Flags: Precursor; 93 7e-19
AC116956_1(AC116956|pid:none) Dictyostelium discoideum chromosom... 93 7e-19
CP000682_1469(CP000682|pid:none) Metallosphaera sedula DSM 5348,... 38 0.60
CP000269_2685(CP000269|pid:none) Janthinobacterium sp. Marseille... 37 1.8
CP002528_2423(CP002528|pid:none) Krokinobacter sp. 4H-3-7-5, com... 35 3.9
CP002158_1178(CP002158|pid:none) Fibrobacter succinogenes subsp.... 35 3.9
AF082528_1(AF082528|pid:none) Entamoeba dispar strain SAW 142 po... 35 5.1
(Q24824) RecName: Full=Pore-forming peptide ameobapore B; AltNam... 35 5.1
CP001699_5290(CP001699|pid:none) Chitinophaga pinensis DSM 2588,... 35 5.1
AM398681_673(AM398681|pid:none) Flavobacterium psychrophilum JIP... 34 8.7
>(Q86IV5) RecName: Full=Countin-1; Flags: Precursor;
&AC116986_112(AC116986|pid:none)
Length = 258
Score = 335 bits (859), Expect(2) = e-110
Identities = 163/163 (100%), Positives = 163/163 (100%)
Frame = +1
Query: 220 PGGQIVDTVCDLLCDYVGVDEFIKLISDVDPDPIYICEKISVCKTNDNAAASLDLVQINP 399
PGGQIVDTVCDLLCDYVGVDEFIKLISDVDPDPIYICEKISVCKTNDNAAASLDLVQINP
Sbjct: 60 PGGQIVDTVCDLLCDYVGVDEFIKLISDVDPDPIYICEKISVCKTNDNAAASLDLVQINP 119
Query: 400 QNGTVGGTFTLSIAYTVTNTIATGQLAFNIIDPTGNAFGDAVLLVQQSPEQYTQQFQFQA 579
QNGTVGGTFTLSIAYTVTNTIATGQLAFNIIDPTGNAFGDAVLLVQQSPEQYTQQFQFQA
Sbjct: 120 QNGTVGGTFTLSIAYTVTNTIATGQLAFNIIDPTGNAFGDAVLLVQQSPEQYTQQFQFQA 179
Query: 580 TPSEQESFPNGLYTVQALVCEGSCGSPHPNTYTLANGTTTFTI 708
TPSEQESFPNGLYTVQALVCEGSCGSPHPNTYTLANGTTTFTI
Sbjct: 180 TPSEQESFPNGLYTVQALVCEGSCGSPHPNTYTLANGTTTFTI 222
Score = 88.6 bits (218), Expect(2) = e-110
Identities = 46/59 (77%), Positives = 46/59 (77%)
Frame = +3
Query: 42 MNKLFSLILALFLVNSAVVSSLDSCSICVDFVGXXXXXXXXXXXXXGVIGTCGDLCSAV 218
MNKLFSLILALFLVNSAVVSSLDSCSICVDFVG GVIGTCGDLCSAV
Sbjct: 1 MNKLFSLILALFLVNSAVVSSLDSCSICVDFVGNSLNDLLNIILNSGVIGTCGDLCSAV 59
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 1,979,487,562
Number of extensions: 37628498
Number of successful extensions: 118220
Number of sequences better than 10.0: 14
Number of HSP's gapped: 117800
Number of HSP's successfully gapped: 19
Length of query: 286
Length of database: 1,732,582,204
Length adjustment: 130
Effective length of query: 156
Effective length of database: 1,037,184,514
Effective search space: 161800784184
Effective search space used: 161800784184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Dictyostelium discoideum cDNA Project Home