Homology VSI490 vs DNA
Query= VSI490 (VSI490Q) /CSM/VS/VSI4-D/VSI490Q.Seq.d/
(860 letters)
Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU268777) Dictyostelium discoideum vegetative cDNA clone:VS... 1178 0.0 1
(AF140780) Dictyostelium discoideum countin gene, complete cds. 1158 0.0 2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 1158 0.0 2
(AU262596) Dictyostelium discoideum vegetative cDNA clone:VS... 1158 0.0 1
(C23640) Dictyostelium discoideum gamete cDNA, clone FC-AA21. 1158 0.0 2
(AU284873) Dictyostelium discoideum gamete cDNA clone:FC-BO0... 1114 0.0 1
(AU061624) Dictyostelium discoideum slug cDNA, clone SLE884. 1078 0.0 2
(AU264786) Dictyostelium discoideum vegetative cDNA clone:VS... 1021 0.0 2
(AU265880) Dictyostelium discoideum vegetative cDNA clone:VS... 771 0.0 4
(AU269995) Dictyostelium discoideum vegetative cDNA clone:VS... 1025 0.0 2
(AU269994) Dictyostelium discoideum vegetative cDNA clone:VS... 753 0.0 2
(AU261892) Dictyostelium discoideum vegetative cDNA clone:VS... 1021 0.0 1
(AU266618) Dictyostelium discoideum vegetative cDNA clone:VS... 680 0.0 2
(C92103) Dictyostelium discoideum slug cDNA, clone SSD491. 1013 0.0 1
(AU262519) Dictyostelium discoideum vegetative cDNA clone:VS... 987 0.0 1
(AU262766) Dictyostelium discoideum vegetative cDNA clone:VS... 965 0.0 1
(AU268776) Dictyostelium discoideum vegetative cDNA clone:VS... 599 0.0 3
(AU033670) Dictyostelium discoideum slug cDNA, clone SLB293. 543 0.0 2
(AU265879) Dictyostelium discoideum vegetative cDNA clone:VS... 609 0.0 2
(AU262913) Dictyostelium discoideum vegetative cDNA clone:VS... 894 0.0 1
(AU263954) Dictyostelium discoideum vegetative cDNA clone:VS... 874 0.0 1
(AU263953) Dictyostelium discoideum vegetative cDNA clone:VS... 874 0.0 1
(AU264785) Dictyostelium discoideum vegetative cDNA clone:VS... 494 0.0 2
(AU039638) Dictyostelium discoideum slug cDNA, clone SLE884. 795 0.0 1
(AU052176) Dictyostelium discoideum slug cDNA, clone SLA179. 714 0.0 2
(AU261875) Dictyostelium discoideum vegetative cDNA clone:VS... 678 0.0 1
(AU275039) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 563 e-156 1
(AU275038) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 563 e-156 1
(AU272072) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 559 e-155 1
(AU271397) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 559 e-155 1
(AU272337) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 553 e-153 1
(AU271398) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 533 e-147 1
(AU039869) Dictyostelium discoideum slug cDNA, clone SLG625. 484 e-132 1
(AU072136) Dictyostelium discoideum slug cDNA, clone SSD491. 363 e-120 2
(AU053455) Dictyostelium discoideum slug cDNA, clone SLI681. 414 e-111 1
(AU262688) Dictyostelium discoideum vegetative cDNA clone:VS... 396 e-106 1
(AU275130) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 375 e-105 2
(AU275129) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 355 e-104 2
(AU262028) Dictyostelium discoideum vegetative cDNA clone:VS... 329 1e-85 1
(AU271465) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 325 2e-84 1
(AU271464) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 325 2e-84 1
(AU272138) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 272 1e-76 2
(AU272071) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 224 4e-54 1
(AU272073) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 109 5e-38 2
(AB211530) Dictyostelium discoideum ctnC gene for countin3, ... 54 2e-07 2
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 54 7e-07 5
(AU272044) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 54 0.009 1
(AU272043) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 54 0.009 1
(AC218805) Bos taurus clone CH240-292N10, WORKING DRAFT SEQU... 52 0.037 1
(AC218803) Bos taurus clone CH240-292M16, WORKING DRAFT SEQU... 52 0.037 1
(AC218727) Bos taurus clone CH240-295M9, WORKING DRAFT SEQUE... 52 0.037 1
(DU063938) 71752 Tomato HindIII BAC Library Solanum lycopers... 48 0.58 1
(GE093596) 454GmaGlobSeed836244 Soybean Seeds Containing Glo... 48 0.58 1
(GD757295) 454GmaGlobSeed499944 Soybean Seeds Containing Glo... 48 0.58 1
(GD737995) 454GmaGlobSeed480644 Soybean Seeds Containing Glo... 48 0.58 1
(AJ251114) Mucor circinelloides f. lusitanicus odc gene for ... 42 1.1 2
(AC199425) Macaca mulatta clone CH250-118K20, WORKING DRAFT ... 40 1.5 3
(EJ501316) 1095403636988 Global-Ocean-Sampling_GS-28-01-01-1... 36 1.6 2
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN... 46 2.3 1
(AM465207) Vitis vinifera contig VV78X046685.3, whole genome... 46 2.3 1
(AC121361) Oryza sativa Japonica Group chromosome 5 clone OS... 46 2.3 1
(AC108503) Oryza sativa Japonica Group chromosome 5 clone OJ... 46 2.3 1
(EA682860) Sequence 61739 from patent US 7365185. 46 2.3 1
(AL627310) Human DNA sequence from clone RP11-199P24 on chro... 46 2.3 1
(AL645770) Human DNA sequence *** SEQUENCING CANCELLED *** f... 46 2.3 1
(EJ964214) 1093022028478 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.3 1
(ED272714) AUAC-aax32e03.g1 Ascaris suum whole genome shotgu... 46 2.3 1
(AM920431) Penicillium chrysogenum Wisconsin 54-1255 complet... 34 3.5 2
(AC198286) Spermophilus tridecemlineatus clone VMRC20-645I11... 34 4.3 2
(BX323843) Zebrafish DNA sequence from clone CH211-10A23 in ... 32 4.4 2
(DX270573) OR_ABa0166F10.r OR_ABa Oryza ridleyi genomic clon... 42 5.1 2
(AR549810) Sequence 4941 from patent US 6747137. 34 5.2 3
(CP001425) Borrelia burgdorferi 64b plasmid 64b_lp36, comple... 36 5.3 4
(AE000788) Borrelia burgdorferi B31 plasmid lp36, complete s... 36 5.3 4
(CP001201) Borrelia burgdorferi ZS7 plasmid ZS7_lp36, comple... 36 5.3 4
(CP001567) Borrelia burgdorferi Bol26 plasmid Bol26_lp36, co... 36 5.3 4
(BX136128) Danio rerio genomic clone DKEY-93H8, genomic surv... 32 5.8 2
(EK560782) 1095521001863 Global-Ocean-Sampling_GS-32-01-01-1... 42 6.2 2
(DW075053) CLPX10801.b1_A13.ab1 CLP(XYZ) lettuce perennis La... 38 6.6 2
(DW094750) CLPY589.b1_I04.ab1 CLP(XYZ) lettuce perennis Lact... 38 6.8 2
(DW096058) CLPY7115.b1_E04.ab1 CLP(XYZ) lettuce perennis Lac... 38 6.9 2
(EK539686) 1095516053054 Global-Ocean-Sampling_GS-32-01-01-1... 42 6.9 2
(AL732634) Mouse DNA sequence from clone RP23-322G19 on chro... 36 7.2 6
(AC209101) Populus trichocarpa clone POP044-H01, complete se... 40 8.2 3
(CR376804) Zebrafish DNA sequence from clone DKEY-42P14 in l... 44 9.0 1
(BX510315) Zebrafish DNA sequence from clone CH211-59I18 in ... 44 9.0 1
(AL928830) Zebrafish DNA sequence from clone CH211-119E16. 44 9.0 1
(AL928577) Mouse DNA sequence from clone RP23-395H4 on chrom... 44 9.0 1
(AC153924) Mus musculus 10 BAC RP23-74P12 (Roswell Park Canc... 44 9.0 1
(AC153876) Mus musculus 10 BAC RP23-218D7 (Roswell Park Canc... 44 9.0 1
(AC137981) Mus musculus BAC clone RP24-156N24 from chromosom... 44 9.0 1
(AC115290) Mus musculus BAC clone RP23-65M10 from chromosome... 44 9.0 1
(AC220918) Pan troglodytes BAC clone CH251-41A22 from chromo... 44 9.0 1
(AC192468) Pan troglodytes BAC clone CH251-584M11 from chrom... 44 9.0 1
(AP008212) Oryza sativa (japonica cultivar-group) genomic DN... 44 9.0 1
(AP000399) Oryza sativa Japonica Group genomic DNA, chromoso... 44 9.0 1
(AM463839) Vitis vinifera contig VV78X093520.4, whole genome... 44 9.0 1
(AM458362) Vitis vinifera contig VV78X201921.11, whole genom... 44 9.0 1
(AM443527) Vitis vinifera contig VV78X146772.4, whole genome... 44 9.0 1
(AM438516) Vitis vinifera contig VV78X074599.5, whole genome... 44 9.0 1
(AC138464) Medicago truncatula chromosome 6 clone mth2-29i23... 44 9.0 1
(AC006437) Arabidopsis thaliana chromosome 2 clone T19K21 ma... 44 9.0 1
(CT476833) Pig DNA sequence from clone XX-BE151C22 on chromo... 44 9.0 1
(AC122130) Homo sapiens chromosome UNK clone RP13-527A15, **... 44 9.0 1
(AC110894) Mus musculus chromosome 10 clone RP24-164I8 map 1... 44 9.0 1
(AC097539) Rattus norvegicus clone CH230-9E21, *** SEQUENCIN... 44 9.0 1
(AC094758) Rattus norvegicus clone CH230-5I17, WORKING DRAFT... 44 9.0 1
(CT025941) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.0 1
(BX324152) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 9.0 1
(AZ843847) 2M0142G19R Mouse 10kb plasmid UUGC1M library Mus ... 44 9.0 1
(EK566826) 1095521047248 Global-Ocean-Sampling_GS-32-01-01-1... 44 9.0 1
(EK512062) 1095515483177 Global-Ocean-Sampling_GS-32-01-01-1... 44 9.0 1
(EJ957017) 1093018976916 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.0 1
(EJ939788) 1093018858445 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.0 1
(EJ397023) 1093012006415 Global-Ocean-Sampling_GS-28-01-01-1... 44 9.0 1
(EJ219494) 1092351200071 Global-Ocean-Sampling_GS-27-01-01-1... 44 9.0 1
(EJ064209) 1095458020603 Global-Ocean-Sampling_GS-26-01-01-1... 44 9.0 1
(EI883390) CAH1-63F18TV CAA1Ba Cicer arietinum genomic clone... 44 9.0 1
(DX351486) OR_ABa0283M18.f OR_ABa Oryza ridleyi genomic clon... 44 9.0 1
(DX250445) OR_ABa0138F01.r OR_ABa Oryza ridleyi genomic clon... 44 9.0 1
(DX207072) OR_ABa0078E16.f OR_ABa Oryza ridleyi genomic clon... 44 9.0 1
(CL868411) Gma_02_N21_T3 Soybean Genome Shotgun Sequences Gl... 44 9.0 1
(CE283278) tigr-gss-dog-17000333776861 Dog Library Canis lup... 44 9.0 1
(EL651033) AGENCOURT_97945257 NCI_CGAP_ZEmb3 Danio rerio cDN... 44 9.0 1
(EE887720) Sa_rcgd_11J16_M13R-29 Spiny dogfish shark rectal ... 44 9.0 1
(AU270749) Dictyostelium discoideum vegetative cDNA clone:VS... 44 9.0 1
(AU270748) Dictyostelium discoideum vegetative cDNA clone:VS... 44 9.0 1
(AU267340) Dictyostelium discoideum vegetative cDNA clone:VS... 44 9.0 1
(AU266657) Dictyostelium discoideum vegetative cDNA clone:VS... 44 9.0 1
(AU266249) Dictyostelium discoideum vegetative cDNA clone:VS... 44 9.0 1
(AU266248) Dictyostelium discoideum vegetative cDNA clone:VS... 44 9.0 1
(AU263912) Dictyostelium discoideum vegetative cDNA clone:VS... 44 9.0 1
(AU263462) Dictyostelium discoideum vegetative cDNA clone:VS... 44 9.0 1
(AU262550) Dictyostelium discoideum vegetative cDNA clone:VS... 44 9.0 1
(DR416995) gPGC_EST06837 Embryonic gonadal PGC cDNA Library ... 44 9.0 1
(AU052862) Dictyostelium discoideum slug cDNA, clone SLF225. 44 9.0 1
(BU482321) 603842960F1 CSEQRBN22 Gallus gallus cDNA clone Ch... 44 9.0 1
(BJ446721) Dictyostelium discoideum cDNA clone:ddv63k13, 3' ... 44 9.0 1
(BJ442208) Dictyostelium discoideum cDNA clone:ddv49l06, 3' ... 44 9.0 1
(BJ441765) Dictyostelium discoideum cDNA clone:ddv47e22, 3' ... 44 9.0 1
(BJ429612) Dictyostelium discoideum cDNA clone:ddv4p03, 3' e... 44 9.0 1
(BJ427796) Dictyostelium discoideum cDNA clone:ddv63k13, 5' ... 44 9.0 1
(BJ425524) Dictyostelium discoideum cDNA clone:ddv56b05, 5' ... 44 9.0 1
(BJ423426) Dictyostelium discoideum cDNA clone:ddv49l06, 5' ... 44 9.0 1
(BJ423015) Dictyostelium discoideum cDNA clone:ddv47e22, 5' ... 44 9.0 1
(BJ418722) Dictyostelium discoideum cDNA clone:ddv33c24, 5' ... 44 9.0 1
(BJ410987) Dictyostelium discoideum cDNA clone:ddv2h18, 5' e... 44 9.0 1
(BB979747) Plasmodium berghei str. ANKA cDNA clone: OK009854... 44 9.0 1
(FF840461) EST_tthy_evl_876843 tthy_evl Thymallus thymallus ... 44 9.0 1
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 44 9.0 1
>(AU268777) Dictyostelium discoideum vegetative cDNA clone:VSI490,
3' end single read.
Length = 654
Score = 1178 bits (594), Expect = 0.0
Identities = 597/597 (100%)
Strand = Plus / Plus
Query: 207 tgctcagctgttnccaggtggtcaaattgttgataccgtttgcgacttattatgcgatta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctcagctgttnccaggtggtcaaattgttgataccgtttgcgacttattatgcgatta 60
Query: 267 tgttggcgttgatgaatttattaaactcatttcagatgttgacccagatccaatttacat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgttggcgttgatgaatttattaaactcatttcagatgttgacccagatccaatttacat 120
Query: 327 ttgtgaaaagatcagtgtttgcaaaaccaacgataacgcagctgcttcattagatttagt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttgtgaaaagatcagtgtttgcaaaaccaacgataacgcagctgcttcattagatttagt 180
Query: 387 tcaaattaacccacaaaacggtactgtcggtggaacattcaccctctcaattgcttacac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcaaattaacccacaaaacggtactgtcggtggaacattcaccctctcaattgcttacac 240
Query: 447 tgttaccaacaccatcgccactggtcaattagctttcaatatcatcgatccaaccggtaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgttaccaacaccatcgccactggtcaattagctttcaatatcatcgatccaaccggtaa 300
Query: 507 tgcttttggtgatgccgttttattagttcaacaatcaccagaacaatacacccaacaatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgcttttggtgatgccgttttattagttcaacaatcaccagaacaatacacccaacaatt 360
Query: 567 ccaattccaagctaccccatcagaacaagaatcattcccaaatggtttatacactgtcca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccaattccaagctaccccatcagaacaagaatcattcccaaatggtttatacactgtcca 420
Query: 627 agctctcgtttgtgaaggttcatgtggttcaccacatccaaacacttacactcttgccaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agctctcgtttgtgaaggttcatgtggttcaccacatccaaacacttacactcttgccaa 480
Query: 687 cggtaccaccactttcaccatctctggtgctgattcttcatcaatgtctggtgctggttc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cggtaccaccactttcaccatctctggtgctgattcttcatcaatgtctggtgctggttc 540
Query: 747 tttctctggttcttcccaatcaacccaaactggtgccgcctctggttcaggttcagg 803
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tttctctggttcttcccaatcaacccaaactggtgccgcctctggttcaggttcagg 597
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 908,347,430
Number of extensions: 53093394
Number of successful extensions: 4207664
Number of sequences better than 10.0: 150
Length of query: 860
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 836
Effective length of database: 102,084,959,077
Effective search space: 85343025788372
Effective search space used: 85343025788372
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home