Dictyostelium discoideum cDNA Clone VSI403

Sequence VSI403

CGCGTCCGAA TTTTAAGAAA ATGCCTCACT CATTCGGTCT CCGTGCTCGT
ACCAGATACT TGTTCTCTCG TGGTTTCAGA AACCATGGTC TCTTACAAAC
CACCACCTTC TTAAGAACTT TCCGTTTAGG TGATTACGTT GATATCAAAG
CCACCGGTAA TGTACACAAA GGTATGCCAC ACAAATTCTA CCACGGTCGT
ACCGGTCGTG TTTGGAATGT TACTCCACGT GCTGTTGGTG TCATCATCAA
CAAACGTGTT GGTCCAAGAA TCATTGCCAA GAAAATCCAC GTCAGAACTG
AACACGTCAA ACCATCAAAC TCCATGGCTG CTCACTTAAA ACGTATCCAA
GAAAACAAAA AAGCTGTCGT TGAAGCCAAG AAAGCCGGTA AATGGGTCGA
TGTTAGACGT AACCCAGCTG CACCAAAGGA CGGTTTCTTT GTCAACCCAA
GAAACACTGA ATTCGTTGAA GTCAAACCAG TCAAATACGA ACTTTTATTA
TAAATTAATT TAAAAGGAGT GGTGGCTAAT ATGGTTCAAT CGCAATCCTT
TGATTATCCA AATTTGTCTT ATTTAAAAAA GAAAAATAAA AAAAAATATA
AAAAAAAAA- ---------A ATTTTAAGAA AATGCCTCAC TCATTCGGTC
TCCGTGCTCG TACCAGATAC TTGTTCTCTC GTGGTTTCAG AAACCATGGT
CTCTTACAAA CCACCACCTT CTTAAGAACT TTCCGTTTAG GTGATTACGT
TGATATCAAA GCCACCGGTA ATGTACACAA AGGTATGCCA CACAAATTCT
ACCACGGTCG TACCGGTCGT GTTTGGAATG TTACTCCACG TGCTGTTGGT
GTCATCATCA ACAAACGTGT TGGTCCAAGA ATCATTGCCA AGAAAATCCA
CGTCAGAACT GAACACGTCA AACCATCAAA CTCCATGGCT GCTCACTTAA
AACGTATCCA AGAAAACAAA AAAGCTGTCG TTGAAGCCAA GAAAGCCGGT
AAATGGGTCG ATGTTAGACG TAACCCAGCT GCACCAAAGG ACGGTTTCTT
TGTCAACCCA AGAAACACTG AATTCGTTGA AGTCAAACCA GTCAAATACG
AACTTTTATT ATAAATTAAT TTAAAAGAGT GGGGCTAATA TGGTTCAATC
GCAATC

Translated Amino Acid Sequence VSI403

rpnfkkmphsfglrartrylfsrgfrnhgllqtttflrtfrlgdyvdikatgnvhkgmph
kfyhgrtgrvwnvtpravgviinkrvgpriiakkihvrtehvkpsnsmaahlkriqenkk
avveakkagkwvdvrrnpaapkdgffvnprntefvevkpvkyelll*INLKGVVANMVQS
QSFDYPNLSYLKKKNKKKYKKK---

---NFKKMPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMP
HKFYHGRTGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENK
KAVVEAKKAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELLL*inlkewg*ygsi
ai

Homology VSI403 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VSI403 (VSI403Q) /CSM/VS/VSI4-A/VSI403Q.Seq.d/                       1138   0.0
VHK774 (VHK774Q) /CSM/VH/VHK7-D/VHK774Q.Seq.d/                       1106   0.0
VHH523 (VHH523Q) /CSM/VH/VHH5-A/VHH523Q.Seq.d/                       1106   0.0
VFL168 (VFL168Q) /CSM/VF/VFL1-C/VFL168Q.Seq.d/                       1106   0.0
VFJ214 (VFJ214Q) /CSM/VF/VFJ2-A/VFJ214Q.Seq.d/                       1106   0.0
FC-193 (FC-193Q) /CSM/CG/CG-FC/FC-193Q.Seq.d/                        1104   0.0
VSB776 (VSB776Q) /CSM/VS/VSB7-D/VSB776Q.Seq.d/                       1094   0.0
VSF754 (VSF754Q) /CSM/VS/VSF7-C/VSF754Q.Seq.d/                       1092   0.0
VSB311 (VSB311Q) /CSM/VS/VSB3-A/VSB311Q.Seq.d/                       1088   0.0
FC-BQ22 (FC-BQ22Q) /CSM/FC/FC-BQ/FC-BQ22Q.Seq.d/                     1088   0.0

Homology VSI403 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU268639) Dictyostelium discoideum vegetative cDNA clone:VS...  1138   0.0    1
(BJ424534) Dictyostelium discoideum cDNA clone:ddv52d19, 5' ...  1017   0.0    2
(BJ422514) Dictyostelium discoideum cDNA clone:ddv46m05, 5' ...  1017   0.0    2
(BJ415743) Dictyostelium discoideum cDNA clone:ddv23g17, 5' ...  1017   0.0    2
(BJ414431) Dictyostelium discoideum cDNA clone:ddv19k04, 5' ...  1017   0.0    2
(AU262240) Dictyostelium discoideum vegetative cDNA clone:VS...  1011   0.0    2
(AU265734) Dictyostelium discoideum vegetative cDNA clone:VS...  1003   0.0    2
(AU261946) Dictyostelium discoideum vegetative cDNA clone:VS...   999   0.0    2
(AU284945) Dictyostelium discoideum gamete cDNA clone:FC-BQ2...  1007   0.0    2
(AU261683) Dictyostelium discoideum vegetative cDNA clone:VS...   997   0.0    2

Homology VSI403 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54X53) RecName: Full=60S ribosomal protein L21;                     268   3e-70
FN357335_1(FN357335|pid:none) Schistosoma mansoni genome sequenc...   154   9e-36
AY813279_1(AY813279|pid:none) Schistosoma japonicum SJCHGC00639 ...   150   1e-34
GN110337_1(GN110337|pid:none) Sequence 15118 from Patent WO20090...   150   2e-34
GN110445_1(GN110445|pid:none) Sequence 15226 from Patent WO20090...   149   3e-34
AF475114_1(AF475114|pid:none) Triticum aestivum 60s ribosomal pr...   149   4e-34
AK354981_1(AK354981|pid:none) Hordeum vulgare subsp. vulgare mRN...   149   4e-34
GN110339_1(GN110339|pid:none) Sequence 15120 from Patent WO20090...   149   4e-34
GN110301_1(GN110301|pid:none) Sequence 15082 from Patent WO20090...   147   8e-34
GN110441_1(GN110441|pid:none) Sequence 15222 from Patent WO20090...   147   8e-34

Homology VSI403 vs Genome