Homology VSH714 vs Protein
Query= VSH714 (VSH714Q) /CSM/VS/VSH7-A/VSH714Q.Seq.d/
(431 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U02291_1(U02291|pid:none) Dictyostelium discoideum mitochondrial... 107 2e-22
(Q2LCP4) RecName: Full=Uncharacterized mitochondrial protein Mp3... 84 2e-15
>U02291_1(U02291|pid:none) Dictyostelium discoideum mitochondrial
NADH:ubiquinone oxidoreductase 80 kDa subunit gene,
complete cds and chain 5 gene, partial cds.
Length = 104
Score = 107 bits (268), Expect = 2e-22
Identities = 51/53 (96%), Positives = 51/53 (96%)
Frame = +1
Query: 13 KAQIKYNVLDIEIRKPGFHSIINTILYKLWYIYEDQGLLXMXKFTKNKAHGSM 171
KAQIKYNVLDIEIRKPGFHSIINTILYKLWYIYEDQGLL M KFTKNKAHGSM
Sbjct: 44 KAQIKYNVLDIEIRKPGFHSIINTILYKLWYIYEDQGLLRMYKFTKNKAHGSM 96
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 770,334,534
Number of extensions: 10993725
Number of successful extensions: 16425
Number of sequences better than 10.0: 2
Number of HSP's gapped: 16417
Number of HSP's successfully gapped: 2
Length of query: 143
Length of database: 1,732,582,204
Length adjustment: 106
Effective length of query: 37
Effective length of database: 1,165,565,626
Effective search space: 43125928162
Effective search space used: 43125928162
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
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