Dictyostelium discoideum cDNA Clone VSG556

Sequence VSG556

GGNGAATTAA AACAATATAA ACGATATACA AAGACACGAT TAAATATAAT
ATCGAATAAG GTATTTTTAT TAAAGAATGA ATTATATCCG TTACAACCAA
AAAAAAAGAG AGGGAAAAGG GATCAACAAT TGAAAACAAC TTATACGAAA
AAAAAATTAA AAAGAATCTT ATCATTATTG TTTCGTATAG GTGGAAAAAT
TTATAGAAAA AAAATAAAAA AGAAAAAAAT AAATTTAAAA AAACAGCAAG
AACCTTTTAC ACAGAATTTA ACATTACATC GATTATTTCG AAAGTTTTAT
TTAAATTTAA AATTAAAACA ATTTAAATTA TTATATAAGA AATATAAAGG
AAATGAAAAA GTAATAATAC AACAATTAGA AAAAAGAGTA GATATGGTAT
TATTACGAAG TGGTTTTGTA AGAAGTCTGT ATGAAGCGAG ACAAATAATA
AATCATAAAC ATCTTTTAGT GAATGGAAAA ATCGCAAGCT TACCTGGATA
TATGATAAAT GTAGGTGA-- --------

Translated Amino Acid Sequence VSG556

GELKQYKRYTKTRLNIISNKVFLLKNELYPLQPKKKRGKRDQQLKTTYTKKKLKRILSLL
FRIGGKIYRKKIKKKKINLKKQQEPFTQNLTLHRLFRKFYLNLKLKQFKLLYKKYKGNEK
VIIQQLEKRVDMVLLRSGFVRSLYEARQIINHKHLLVNGKIASLPGYMINVG---

Homology VSG556 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VSG556 (VSG556Q) /CSM/VS/VSG5-C/VSG556Q.Seq.d/                        295   3e-79
VSA843 (VSA843Q) /CSM/VS/VSA8-B/VSA843Q.Seq.d/                        295   3e-79
VSA516 (VSA516Q) /CSM/VS/VSA5-A/VSA516Q.Seq.d/                        295   3e-79
VSA486 (VSA486Q) /CSM/VS/VSA4-D/VSA486Q.Seq.d/                        295   3e-79
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/               295   3e-79
FC-IC0976 (FC-IC0976Q) /CSM/FC-IC/FC-IC0976Q.Seq.d/                   295   3e-79
FC-BG02 (FC-BG02Q) /CSM/FC/FC-BG/FC-BG02Q.Seq.d/                      295   3e-79
VSE534 (VSE534Q) /CSM/VS/VSE5-B/VSE534Q.Seq.d/                        293   1e-78
VSE538 (VSE538Q) /CSM/VS/VSE5-B/VSE538Q.Seq.d/                        270   2e-71
VSB284 (VSB284Q) /CSM/VS/VSB2-D/VSB284Q.Seq.d/                        254   1e-66

Homology VSG556 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU266621) Dictyostelium discoideum vegetative cDNA clone:VS...   262   e-150  5
(AF155828) Dictyostelium discoideum NADH dehydrogenase subun...   262   e-146  5
(AB000109) Dictyostelium discoideum mitochondrial DNA, compl...   262   e-141  5
(AU261779) Dictyostelium discoideum vegetative cDNA clone:VS...   262   e-139  5
(AU272023) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   262   4e-82  3
(AU261533) Dictyostelium discoideum vegetative cDNA clone:VS...   262   1e-70  2
(AU261514) Dictyostelium discoideum vegetative cDNA clone:VS...   262   1e-70  2
(AU284646) Dictyostelium discoideum gamete cDNA clone:FC-BG0...   262   9e-66  2
(AU263181) Dictyostelium discoideum vegetative cDNA clone:VS...   262   2e-65  1
(AU263177) Dictyostelium discoideum vegetative cDNA clone:VS...   262   2e-65  1

Homology VSG556 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q9XPI8) RecName: Full=Ribosomal protein S4, mitochondrial;  &AB...   232   6e-60
EU275726_45(EU275726|pid:none) Polysphondylium pallidum strain P...    63   6e-09
(Q97J08) RecName: Full=Putative 30S ribosomal protein S4 B;  &AE...    60   4e-08
CP001867_170(CP001867|pid:none) Geodermatophilus obscurus DSM 43...    60   4e-08
FP929062_1640(FP929062|pid:none) Clostridiales sp. SS3/4 draft g...    60   4e-08
CP002171_782(CP002171|pid:none) Thermoanaerobacterium thermosacc...    59   9e-08
AF295546_15(AF295546|pid:none) Malawimonas jakobiformis mitochon...    59   1e-07
FP929037_2763(FP929037|pid:none) Clostridium saccharolyticum-lik...    58   2e-07
CP002666_1992(CP002666|pid:none) Cellulomonas fimi ATCC 484, com...    58   3e-07
JF317517_1(JF317517|pid:none) Barbeya oleoides ribosomal protein...    58   3e-07

Homology VSG556 vs Genome