Dictyostelium discoideum cDNA Clone VSG317

Sequence VSG317

AAATGTCCGA AAATAACGAA ATTGAAATGG AACTCCCATT TGACTCATCT
GCAATTACTT CAACAGAAGT TTTAGACAGA GTTAATGCTT TACTCACTCT
CCAAGATACA CAAAATGAAT TAACGGAACA AATGGAAAAA GAAATTTTAG
AAATTGAAAA GAAATATTTA AAAAAATTCC AACCACTCGC AGAAAAGAGA
TTTGAAATTG TATCAGGTAA AGTTGAACCA ACCAAAGAAG ATCAACAATG
TAAAGCACCA ATTCAAGTTG AAAACCTTAA ATCTGTTCCA ACCGATAAAG
GTATTCCAAA GTTCTGGTTA CATGTCTTAC AAAACACCGA AGTCAAAGAT
ATCATTGAAG AATGTGATAT TGAAGCTTTA GAGTATTTAG TTGATATTAA
AATCGTTCAA GTCGGTGACG CACAAGACTA CTCATTAGAT TTCCACTTTA
GTGAAAATCC ATTCTTCACC AACACTGTCA TCTCCAAAAC CGTCAAACTC
GAAGAAGATA ACGAATTAAA TGAAATCGTC TCAACCCCAA TCAATTGGAA
AGATGGTAAA AACTTTACCG TTCAATCAAA GAAGAAAACT GTTAAATCAA
AACCAACCAA AGGTAAAGCT GCCACCACCA CCTCTACCAC CGTTCAAGAG
GTCGTCCCAT GTTTCTTTAG CACCTTTGTC TCACCAAACC AAGATCCAAC
CAGTGATGAA GAAGCTGATG AAATCATGTA CATCCAATAC CAAATTATCG
CCAAATTAAA GGATATCGTT ATCCCAGAAG CCGTTAACTT CTTTTTAGGT
CGTGCTTCAG ATGCCGAAGA AAACGATTAT GACTTTGGTG AAGATTTCGA
AGATGAAGAA GGTGAAGATG ATGATGAAGA AGATGATGAA GAAGAACAAA
CCATTAAAAA ACCATCAGGT AAAGGTAAAG CTCAACCACA ACAACCACAA
GNATTGTAAA CAACAATAAA T

Translated Amino Acid Sequence VSG317

MSENNEIEMELPFDSSAITSTEVLDRVNALLTLQDTQNELTEQMEKEILEIEKKYLKKFQ
PLAEKRFEIVSGKVEPTKEDQQCKAPIQVENLKSVPTDKGIPKFWLHVLQNTEVKDIIEE
CDIEALEYLVDIKIVQVGDAQDYSLDFHFSENPFFTNTVISKTVKLEEDNELNEIVSTPI
NWKDGKNFTVQSKKKTVKSKPTKGKAATTTSTTVQEVVPCFFSTFVSPNQDPTSDEEADE
IMYIQYQIIAKLKDIVIPEAVNFFLGRASDAEENDYDFGEDFEDEEGEDDDEEDDEEEQT
IKKPSGKGKAQPQQPQXL*ttin

Homology VSG317 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VSG317 (VSG317Q) /CSM/VS/VSG3-A/VSG317Q.Seq.d/                       1332   0.0
SLH411 (SLH411Q) /CSM/SL/SLH4-A/SLH411Q.Seq.d/                        961   0.0
VFF672 (VFF672Q) /CSM/VF/VFF6-C/VFF672Q.Seq.d/                        844   0.0
VSA875 (VSA875Q) /CSM/VS/VSA8-D/VSA875Q.Seq.d/                        781   0.0
VSI289 (VSI289Q) /CSM/VS/VSI2-D/VSI289Q.Seq.d/                        745   0.0
VFA432 (VFA432Q) /CSM/VF/VFA4-B/VFA432Q.Seq.d/                        733   0.0
VSG374 (VSG374Q) /CSM/VS/VSG3-D/VSG374Q.Seq.d/                        640   0.0
VSI726 (VSI726Q) /CSM/VS/VSI7-B/VSI726Q.Seq.d/                        632   e-180
FC-AP23 (FC-AP23Q) /CSM/FC/FC-AP/FC-AP23Q.Seq.d/                      611   e-174
FC-271 (FC-271Q) /CSM/CG/CG-FC/FC-271Q.Seq.d/                         611   e-174

Homology VSG317 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


BX088690|BX088690.8 Zebrafish DNA sequence from clone CH211-...    38   0.025  5
BX005146|BX005146.4 Zebrafish DNA sequence from clone CH211-...    38   0.036  4
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 ma...    36   0.036  10
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 ma...    34   0.048  8
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           50   0.059  1
AC121165|AC121165.4 Rattus norvegicus clone CH230-129C5, WOR...    34   0.13   2
AC126094|AC126094.3 Rattus norvegicus clone CH230-289A8, ***...    34   0.13   2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 ma...    32   0.26   11
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 ma...    40   0.28   10
AL935049|AL935049.18 Zebrafish DNA sequence from clone CH211...    38   0.47   6

Homology VSG317 vs Protein

Sequences producing significant alignments:                      (bits) Value


AJ438614_1(AJ438614|pid:none) Nicotiana tabacum mRNA for nucleos...   119   3e-25
AJ438615_1(AJ438615|pid:none) Nicotiana tabacum mRNA for nucleos...   115   4e-24
AJ438612_1(AJ438612|pid:none) Oryza sativa mRNA for nucleosome a...   113   1e-23
AC119291_18(AC119291|pid:none) Oryza sativa (japonica cultivar-g...   113   1e-23
AK367925_1(AK367925|pid:none) Hordeum vulgare subsp. vulgare mRN...   112   3e-23
AY100480_1(AY100480|pid:none) Zea mays nucleosome/chromatin asse...   112   4e-23
AY232823_1(AY232823|pid:none) Zea mays nucleosome/chromatin asse...   111   7e-23
AK071177_1(AK071177|pid:none) Oryza sativa Japonica Group cDNA c...   110   9e-23
BT099259_1(BT099259|pid:none) Soybean clone JCVI-FLGm-26J24 unkn...   110   2e-22
AK373392_1(AK373392|pid:none) Hordeum vulgare subsp. vulgare mRN...   109   2e-22

Homology VSG317 vs Genome