Homology VSC584 vs Protein
Query= VSC584 (VSC584Q) /CSM/VS/VSC5-D/VSC584Q.Seq.d/
(341 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ336395_37(DQ336395|pid:none) Dictyostelium citrinum mitochondr... 55 4e-09
CP000962_194(CP000962|pid:none) Clostridium botulinum A3 str. Lo... 42 0.014
CP001083_198(CP001083|pid:none) Clostridium botulinum Ba4 str. 6... 41 0.019
JF760210_6(JF760210|pid:none) Mnemiopsis leidyi mitochondrion, c... 40 0.032
AM412317_199(AM412317|pid:none) Clostridium botulinum A str. ATC... 39 0.072
CP001581_200(CP001581|pid:none) Clostridium botulinum A2 str. Ky... 39 0.12
JF760210_5(JF760210|pid:none) Mnemiopsis leidyi mitochondrion, c... 39 0.12
CP002219_1025(CP002219|pid:none) Caldicellulosiruptor hydrotherm... 37 0.27
AM412317_1290(AM412317|pid:none) Clostridium botulinum A str. AT... 37 0.27
HM640930_9(HM640930|pid:none) Heterodera glycines mitochondrion,... 37 0.47
FN313571_11(FN313571|pid:none) Radopholus similis complete mitoc... 36 0.79
CP002161_83(CP002161|pid:none) Candidatus Zinderia insecticola C... 36 0.79
AP011529_1500(AP011529|pid:none) Deferribacter desulfuricans SSM... 35 1.4
JF770703_1(JF770703|pid:none) Phytophthora ilicis isolate P3939 ... 35 1.4
CP000061_385(CP000061|pid:none) Aster yellows witches'-broom phy... 35 1.8
CP000728_193(CP000728|pid:none) Clostridium botulinum F str. Lan... 35 1.8
CP001248_36(CP001248|pid:none) Borrelia afzelii ACA-1 plasmid cp... 34 2.3
EF494740_15(EF494740|pid:none) Blastocystis sp. NandII mitochond... 34 2.3
HM640929_4(HM640929|pid:none) Heterodera cardiolata mitochondrio... 34 2.3
JF760210_3(JF760210|pid:none) Mnemiopsis leidyi mitochondrion, c... 34 2.3
HM773029_12(HM773029|pid:none) Chandlerella quiscali mitochondri... 34 3.0
JF770582_1(JF770582|pid:none) Phytophthora cinnamomi isolate P10... 34 3.0
CP001083_1630(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 34 3.0
AE001437_3373(AE001437|pid:none) Clostridium acetobutylicum ATCC... 34 3.0
JF770581_1(JF770581|pid:none) Phytophthora cinnamomi isolate P10... 34 3.0
FJ670142_1(FJ670142|pid:none) Dapania racemosa NADH dehydrogenas... 34 3.0
CP001490_15(CP001490|pid:none) Borrelia burgdorferi 94a plasmid ... 34 3.0
CP002161_175(CP002161|pid:none) Candidatus Zinderia insecticola ... 33 3.9
AY601892_2(AY601892|pid:none) Diuraphis noxia cytochrome b (cytB... 33 3.9
CP002330_979(CP002330|pid:none) Caldicellulosiruptor kronotskyen... 33 3.9
JF770680_1(JF770680|pid:none) Phytophthora foliorum isolate P109... 33 3.9
FJ411411_12(FJ411411|pid:none) Acyrthosiphon pisum strain 5A mit... 33 5.1
EU431937_1(EU431937|pid:none) Phortica sp. 3 XH-2008 isolate 542... 33 5.1
CP000685_2154(CP000685|pid:none) Flavobacterium johnsoniae UW101... 33 5.1
CP000962_1349(CP000962|pid:none) Clostridium botulinum A3 str. L... 33 5.1
AX647673_1(AX647673|pid:none) Sequence 1865 from Patent EP1270724. 33 5.1
JF770850_1(JF770850|pid:none) Phytophthora syringae isolate P103... 33 5.1
CP000728_1276(CP000728|pid:none) Clostridium botulinum F str. La... 33 6.7
CP002563_83(CP002563|pid:none) Carnobacterium sp. 17-4, complete... 33 6.7
HM367068_12(HM367068|pid:none) Panonychus citri mitochondrion, c... 33 6.7
HM189212_12(HM189212|pid:none) Panonychus citri mitochondrion, c... 33 6.7
GQ332427_5(GQ332427|pid:none) Wellcomia siamensis mitochondrion,... 33 6.7
JF770657_1(JF770657|pid:none) Phytophthora cf. citrophthora 1b F... 33 6.7
AP009180_48(AP009180|pid:none) Candidatus Carsonella ruddii PV D... 33 6.7
CP002874_154(CP002874|pid:none) Brachyspira intermedia PWS/A, co... 32 8.8
AB595201_5(AB595201|pid:none) Luciola cruciata mitochondrial DNA... 32 8.8
FJ670139_1(FJ670139|pid:none) Crinodendron hookerianum NADH dehy... 32 8.8
AE009951_1146(AE009951|pid:none) Fusobacterium nucleatum subsp. ... 32 8.8
AJ558163_4(AJ558163|pid:none) Strongyloides stercoralis complete... 32 8.8
AM910996_628(AM910996|pid:none) Plasmodium knowlesi strain H chr... 32 8.8
(C6KTD2) RecName: Full=Putative histone-lysine N-methyltransfera... 32 8.8
JF770805_1(JF770805|pid:none) Phytophthora sp. P11491 isolate P1... 32 8.8
AF396436_8(AF396436|pid:none) Tetrahymena thermophila strain SB2... 32 8.8
CR382401_38(CR382401|pid:none) Plasmodium falciparum chromosome ... 32 8.8
AL844501_96(AL844501|pid:none) Plasmodium falciparum strain 3D7,... 32 8.8
EU431922_1(EU431922|pid:none) Phortica sp. 2 XH-2008 isolate 478... 32 8.8
HM640930_1(HM640930|pid:none) Heterodera glycines mitochondrion,... 32 8.8
JF770580_1(JF770580|pid:none) Phytophthora cinnamomi isolate P10... 32 8.8
GU370075_9(GU370075|pid:none) Ammothea hilgendorfi mitochondrion... 32 8.8
>DQ336395_37(DQ336395|pid:none) Dictyostelium citrinum mitochondrion,
complete genome.
Length = 1775
Score = 55.5 bits (132), Expect(2) = 4e-09
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = +2
Query: 257 FLYPLLITKRQIQKVRLRKKNKIYLLMA 340
FLYPLLI KRQIQKVRLRKKNKIYLLMA
Sbjct: 1607 FLYPLLINKRQIQKVRLRKKNKIYLLMA 1634
Score = 27.7 bits (60), Expect(2) = 4e-09
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +1
Query: 1 IRAGLLRIXXXXXXXXXXXXXXXXERDLVDDIKGITSXSKKYIGVV 138
IR GL R+ + L KGITS SKKYIG V
Sbjct: 1522 IRKGLRRLKQTSTKNQLAVRLKILGKHLKRFTKGITSQSKKYIGAV 1567
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 332,195,965
Number of extensions: 4346980
Number of successful extensions: 19023
Number of sequences better than 10.0: 59
Number of HSP's gapped: 18907
Number of HSP's successfully gapped: 74
Length of query: 113
Length of database: 1,732,582,204
Length adjustment: 80
Effective length of query: 33
Effective length of database: 1,304,645,164
Effective search space: 43053290412
Effective search space used: 43053290412
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)
Dictyostelium discoideum cDNA Project Home