Homology VSC584 vs DNA
Query= VSC584 (VSC584Q) /CSM/VS/VSC5-D/VSC584Q.Seq.d/
(341 letters)
Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum3.seq; ddbjhum4.seq;
ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq; ddbjhum9.seq;
new_ddbjhum.seq; ddbjpri.seq; new_ddbjpri.seq; ddbjrod1.seq;
ddbjrod2.seq; ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq;
new_ddbjrod.seq; ddbjmam.seq; new_ddbjmam.seq; ddbjvrt1.seq;
ddbjvrt2.seq; new_ddbjvrt.seq; ddbjinv1.seq; ddbjinv2.seq;
ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq; new_ddbjinv.seq;
ddbjpln1.seq; ddbjpln2.seq; ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq;
ddbjpln6.seq; new_ddbjpln.seq; ddbjbct1.seq; ddbjbct2.seq;
ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq;
new_ddbjbct.seq; ddbjvrl1.seq; ddbjvrl2.seq; ddbjvrl3.seq;
new_ddbjvrl.seq; ddbjphg.seq; new_ddbjphg.seq; ddbjuna.seq;
new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq; ddbjgss11.seq;
ddbjgss12.seq; ddbjgss13.seq; ddbjgss14.seq; ddbjgss15.seq;
ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq; ddbjgss19.seq;
ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq; ddbjgss22.seq;
ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq; ddbjgss26.seq;
ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq; ddbjgss3.seq;
ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq; ddbjgss33.seq;
ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq; ddbjgss37.seq;
ddbjgss38.seq; ddbjgss39.seq; ddbjgss4.seq; ddbjgss40.seq;
ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq; ddbjgss44.seq;
ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq; ddbjgss48.seq;
ddbjgss49.seq; ddbjgss5.seq; ddbjgss50.seq; ddbjgss51.seq;
ddbjgss52.seq; ddbjgss53.seq; ddbjgss6.seq; ddbjgss7.seq;
ddbjgss8.seq; ddbjgss9.seq; new_ddbjgss1.seq; new_ddbjgss2.seq;
new_ddbjgss3.seq; new_ddbjgss4.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg52.seq; ddbjhtg6.seq; ddbjhtg7.seq;
ddbjhtg8.seq; ddbjhtg9.seq; new_ddbjhtg1.seq; new_ddbjhtg2.seq;
ddbjpat1.seq; ddbjpat2.seq; ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq;
ddbjpat6.seq; ddbjpat7.seq; new_ddbjpat.seq; ddbjsts1.seq;
ddbjsts2.seq; new_ddbjsts.seq; ddbjsyn.seq; new_ddbjsyn.seq;
est_atha1.seq; new_est_atha1.seq; est_cele1.seq; new_est_cele1.seq;
est_drer1.seq; new_est_drer1.seq; est_dmel1.seq; new_est_dmel1.seq;
est_gmax1.seq; new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; new_est_hum1.seq; est_lesc1.seq;
new_est_lesc1.seq; est_mous1.seq; est_mous2.seq; est_mous3.seq;
new_est_mous1.seq; est_osat1.seq; new_est_osat1.seq; est_rnor1.seq;
new_est_rnor1.seq; est_xlae1.seq; new_est_xlae1.seq; est_zmay1.seq;
new_est_zmay1.seq; est_rest1.seq; est_rest2.seq; new_est_rest1.seq
24,929,324 sequences; P,631,589,963 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value N
D21196|D21196.1 Dictyostelium discoideum mitochondrial DNA. 165 e-104 6
AB000109|AB000109.1 Dictyostelium discoideum mitochondrial ... 165 e-101 6
AC124688|AC124688.1 Mus musculus chromosome UNK clone RP24-... 46 0.27 1
AC124570|AC124570.2 Mus musculus chromosome UNK clone RP23-... 46 0.27 1
BB331768|BB331768.1 Mus musculus 6 days neonate medulla obl... 46 0.27 1
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 40 0.29 6
X95276|X95276.1 P.falciparum complete gene map of plastid-l... 32 0.32 4
AC138928|AC138928.1 Homo sapiens chromosome 5 clone RP11-67... 40 0.38 2
AL009030|AL009030.15 Human DNA sequence from clone RP1-28I2... 40 0.74 4
Z81116|Z81116.1 Caenorhabditis elegans cosmid T06C12. 34 1.0 6
AC130205|AC130205.3 Mus musculus chromosome 1 clone RP24-43... 36 1.5 5
AC020675|AC020675.4 Homo sapiens clone RP11-3P6, WORKING DR... 34 1.7 6
BH572247|BH572247.1 BOGVQ05TR BOGV Brassica oleracea genomi... 32 1.9 2
AE001432|AE001432.1 Plasmodium falciparum 3D7 chromosome 2 ... 28 3.5 5
AC021960|AC021960.4 Homo sapiens chromosome 5 clone RP11-24... 42 4.3 1
AC109818|AC109818.5 Homo sapiens BAC clone RP11-293F1 from ... 42 4.3 1
BH981411|BH981411.1 ode16d08.b1 B.oleracea002 Brassica oler... 42 4.3 1
AC015522|AC015522.6 Homo sapiens chromosome 8, clone RP11-3... 42 4.3 1
AC109451|AC109451.1 Homo sapiens chromosome 5 clone RP11-17... 42 4.3 1
BQ622710|BQ622710.1 CC_Contig6 Conidiobolus cornatus ARSEF ... 42 4.3 1
AV312184|AV312184.1 Mus musculus adult male thymus cDNA, RI... 42 4.3 1
AG101853|AG101853.1 Pan troglodytes DNA, clone: PTB-104P19.F. 42 4.3 1
U24159|U24159.1 Bacteriophage HP1 strain HP1c1, complete ge... 44 4.3 2
AC079380|AC079380.6 Homo sapiens BAC clone RP11-427M20 from... 40 4.5 5
AQ011973|AQ011973.1 HS_2190_A1_MR_A11 CIT Approved Human Ge... 28 4.5 3
AF287134|AF287134.1 Ochromonas danica mitochondrial DNA, co... 34 5.3 2
AC021464|AC021464.2 Homo sapiens clone RP11-282K23, WORKING... 32 5.6 7
AX345888|AX345888.1 Sequence 959 from Patent WO0200928. 32 5.6 4
AL133686|AL133686.1 Homo sapiens mRNA; EST DKFZp761H0710_s1... 32 5.9 2
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complet... 36 6.0 8
M97514|M97514.1 Saccharomyces douglasii mitochondrial cytoc... 32 6.0 3
AQ217307|AQ217307.1 HS_2190_A1_A11_MR CIT Approved Human Ge... 28 6.1 3
AC138821|AC138821.2 Homo sapiens chromosome 5 clone RP11-11... 34 7.2 3
AG144363|AG144363.1 Pan troglodytes DNA, clone: RP43-005F10... 32 7.3 2
AC145102|AC145102.1 Homo sapiens chromosome 5 clone RP11-69... 40 7.3 3
AC138961|AC138961.1 Homo sapiens chromosome 5 clone RP11-88... 34 7.5 3
AX392737|AX392737.1 Sequence 27 from Patent WO0212526. 32 7.9 5
AC119862|AC119862.2 Mus musculus clone RP23-292G15, WORKING... 36 8.1 5
AC132747|AC132747.5 Rattus norvegicus clone CH230-160N23, *... 42 8.4 3
BX571776|BX571776.2 Zebrafish DNA sequence *** SEQUENCING I... 32 8.8 8
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10... 32 8.9 8
AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12... 32 9.0 8
AC014453|AC014453.1 Drosophila melanogaster, *** SEQUENCING... 38 9.1 2
BZ385696|BZ385696.1 EINCM67TR EI_10_12_KB Entamoeba invaden... 38 9.6 2
AL354820|AL354820.18 Human DNA sequence from clone RP11-550... 40 12 4
AL645824|AL645824.12 Mouse DNA sequence from clone RP23-200... 42 16 2
AL161433|AL161433.3 Human DNA sequence *** SEQUENCING CANCE... 40 17 1
AC138846|AC138846.1 Homo sapiens chromosome 5 clone RP11-12... 40 17 1
AL049483|AL049483.1 Arabidopsis thaliana DNA chromosome 4, ... 40 17 1
AC145100|AC145100.1 Homo sapiens chromosome 5 clone RP11-13... 40 17 1
AC139505|AC139505.1 Homo sapiens chromosome 5 clone RP11-91... 40 17 1
AC138866|AC138866.1 Homo sapiens chromosome 5 clone RP11-14... 40 17 1
AC138839|AC138839.1 Homo sapiens chromosome 5 clone RP11-12... 40 17 1
AC093247|AC093247.3 Homo sapiens chromosome 5 clone RP11-13... 40 17 1
AC140135|AC140135.1 Homo sapiens chromosome 5 clone RP11-13... 40 17 1
AC127182|AC127182.2 Rattus norvegicus clone CH230-96H21, **... 40 17 1
AC099690|AC099690.8 Mus musculus, clone RP23-73E9, complete... 40 17 1
AC138930|AC138930.1 Homo sapiens chromosome 5 clone RP11-67... 40 17 1
AC093243|AC093243.2 Homo sapiens chromosome 5 clone RP11-11... 40 17 1
AL157879|AL157879.7 Human DNA sequence from clone RP11-110H... 40 17 1
BB048139|BB048139.1 Mus musculus adult male olfactory brain... 40 17 1
AC111705|AC111705.5 Rattus norvegicus clone CH230-32A24, WO... 40 17 1
BZ450898|BZ450898.1 BONFY53TF BO_1.6_2_KB_tot Brassica oler... 40 17 1
AC139501|AC139501.1 Homo sapiens chromosome 5 clone RP11-88... 40 17 1
AC139495|AC139495.1 Homo sapiens chromosome 5 clone RP11-84... 40 17 1
AC138941|AC138941.1 Homo sapiens chromosome 5 clone RP11-71... 40 17 1
AC114970|AC114970.1 Homo sapiens chromosome 5 clone RP11-38... 40 17 1
BH430130|BH430130.1 BOGTV62TR BOGT Brassica oleracea genomi... 40 17 1
AV369195|AV369195.1 Mus musculus adult male colon cDNA, RIK... 40 17 1
AV368758|AV368758.1 Mus musculus adult male colon cDNA, RIK... 40 17 1
AV342663|AV342663.1 Mus musculus adult male olfactory brain... 40 17 1
AV252734|AV252734.1 Mus musculus 0 day neonate head cDNA, R... 40 17 1
AC044800|AC044800.4 Homo sapiens chromosome 5 clone RP11-34... 40 17 1
AC138926|AC138926.2 Homo sapiens chromosome 5 clone RP11-66... 40 17 1
AC101218|AC101218.1 Mus musculus clone RP23-95N11, LOW-PASS... 40 17 1
AC011244|AC011244.4 Homo sapiens chromosome 5 clone RP11-49... 40 17 1
CC131961|CC131961.1 NDL.79J15.SP6 Notre Dame Liverpool Aede... 40 17 1
AC132801|AC132801.2 Homo sapiens chromosome 5 clone CTC-202... 40 17 1
BM169472|BM169472.1 EST571995 PyBS Plasmodium yoelii yoelii... 40 17 1
AV368979|AV368979.1 Mus musculus adult male colon cDNA, RIK... 40 17 1
AV324160|AV324160.1 Mus musculus 11 days embryo head cDNA, ... 40 17 1
AV293217|AV293217.1 Mus musculus 6 days neonate head cDNA, ... 40 17 1
AV135006|AV135006.1 Mus musculus 10-11 day embryo cDNA, par... 40 17 1
BV028486|BV028486.1 S212P60351FE4.T0 CZECHII/Ei Mus musculu... 40 17 1
AC140150|AC140150.1 Homo sapiens chromosome 5 clone RP11-58... 40 17 1
AC139776|AC139776.1 Homo sapiens chromosome 5 clone RP11-10... 40 17 1
AC138939|AC138939.1 Homo sapiens chromosome 5 clone RP11-70... 40 17 1
AC138933|AC138933.1 Homo sapiens chromosome 5 clone RP11-68... 40 17 1
AC138851|AC138851.1 Homo sapiens chromosome 5 clone RP11-13... 40 17 1
AC138911|AC138911.2 Homo sapiens chromosome 5 clone RP11-61... 40 17 1
AV377611|AV377611.1 Mus musculus adult male cecum cDNA, RIK... 40 17 1
AV372294|AV372294.1 Mus musculus adult male colon cDNA, RIK... 40 17 1
AV355093|AV355093.1 Mus musculus adult male adrenal gland c... 40 17 1
AV251420|AV251420.1 Mus musculus 0 day neonate head cDNA, R... 40 17 1
AC138867|AC138867.1 Homo sapiens chromosome 5 clone RP11-14... 40 17 1
AC122971|AC122971.3 Rattus norvegicus clone CH230-223K7, **... 40 17 1
AC112658|AC112658.2 Oryza sativa (japonica cultivar-group) ... 40 17 1
AC138410|AC138410.1 Homo sapiens chromosome 5 clone RP11-11... 40 17 1
BB169954|BB169954.1 Mus musculus adult male hypothalamus cD... 40 17 1
BB071399|BB071399.1 Mus musculus 15 days embryo male testis... 40 17 1
>D21196|D21196.1 Dictyostelium discoideum mitochondrial DNA.
Length = 11779
Score = 46.1 bits (23), Expect(6) = e-104
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 atcagagcaggattattaagaat 23
|||||||||||||||||||||||
Sbjct: 11021 atcagagcaggattattaagaat 11043
Score = 165 bits (83), Expect(6) = e-104
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 31 gcacagcaaacgaaaaaattagcactaaaattaaaattattagaaagggatttagtcgat 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11051 gcacagcaaacgaaaaaattagcactaaaattaaaattattagaaagggatttagtcgat 11110
Query: 91 gatataaaaggaatcacaagtaa 113
|||||||||||||||||||||||
Sbjct: 11111 gatataaaaggaatcacaagtaa 11133
Score = 28.2 bits (14), Expect(6) = e-104
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 124 tatataggagtggt 137
||||||||||||||
Sbjct: 11144 tatataggagtggt 11157
Score = 121 bits (61), Expect(6) = e-104
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 147 caatattaataaaagtcttaataaaagtcttaagaagtttattaaaagcaaatatattaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11166 caatattaataaaagtcttaataaaagtcttaagaagtttattaaaagcaaatatattaa 11225
Query: 207 c 207
|
Sbjct: 11226 c 11226
Score = 109 bits (55), Expect(6) = e-104
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 255 tatttttatatccattattaataacgaaaagacaaatacaaaaagtaagattaag 309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11274 tatttttatatccattattaataacgaaaagacaaatacaaaaagtaagattaag 11328
Score = 46.1 bits (23), Expect(6) = e-104
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 319 taaaatatatttattaatggctc 341
|||||||||||||||||||||||
Sbjct: 11338 taaaatatatttattaatggctc 11360
Score = 26.3 bits (13), Expect(4) = 7.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 60 attaaaattatta 72
|||||||||||||
Sbjct: 3301 attaaaattatta 3313
Score = 26.3 bits (13), Expect(4) = 7.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 148 aatattaataaaa 160
|||||||||||||
Sbjct: 7033 aatattaataaaa 7045
Score = 30.2 bits (15), Expect(4) = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 295 aaaagtaagattaag 309
|||||||||||||||
Sbjct: 7933 aaaagtaagattaag 7947
Score = 28.2 bits (14), Expect(4) = 7.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 324 tatatttattaatg 337
||||||||||||||
Sbjct: 10968 tatatttattaatg 10981
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Hits to DB: 10244332
Number of Sequences: 24929324
Number of extensions: 10244332
Number of successful extensions: 2438799
Number of sequences better than 10.0: 295
length of query: 341
length of database: P,631,589,963
effective HSP length: 22
effective length of query: 319
effective length of database: P,083,144,835
effective search space: 10234523202365
effective search space used: 10234523202365
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
[blastall] WARNING: [000.000] Reached max 200 HSPs in BlastSaveCurrentHsp, continuing with this limit
ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
Dictyostelium discoideum cDNA Project Home