Homology VSB822 vs Protein
Query= VSB822 (VSB822Q) /CSM/VS/VSB8-A/VSB822Q.Seq.d/
(276 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q9XPI7) RecName: Full=Ribosomal protein S2, mitochondrial; ... 106 5e-22
DQ336395_50(DQ336395|pid:none) Dictyostelium citrinum mitochondr... 80 5e-14
AY700145_28(AY700145|pid:none) Polysphondylium pallidum mitochon... 37 0.28
EU275726_46(EU275726|pid:none) Polysphondylium pallidum strain P... 35 1.1
>(Q9XPI7) RecName: Full=Ribosomal protein S2, mitochondrial;
Short=MRP-S2; Short=S2mt;
&AB000109_41(AB000109|pid:none) &T43786(T43786)
Length = 244
Score = 106 bits (264), Expect = 5e-22
Identities = 51/51 (100%), Positives = 51/51 (100%)
Frame = +2
Query: 2 YPLIGNFKSREKRGSVLLLIKHAMFEGMRQEATIFAEYYNKYTRMYKSFLK 154
YPLIGNFKSREKRGSVLLLIKHAMFEGMRQEATIFAEYYNKYTRMYKSFLK
Sbjct: 194 YPLIGNFKSREKRGSVLLLIKHAMFEGMRQEATIFAEYYNKYTRMYKSFLK 244
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 488,772,420
Number of extensions: 6886317
Number of successful extensions: 11526
Number of sequences better than 10.0: 4
Number of HSP's gapped: 11525
Number of HSP's successfully gapped: 4
Length of query: 92
Length of database: 1,732,582,204
Length adjustment: 61
Effective length of query: 31
Effective length of database: 1,406,280,211
Effective search space: 43594686541
Effective search space used: 43594686541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)
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