Homology VSB752 vs DNA
Query= VSB752 (VSB752Q) /CSM/VS/VSB7-C/VSB752Q.Seq.d/
(394 letters)
Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum3.seq; ddbjhum4.seq;
ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq; ddbjhum9.seq;
/db/DDBJNEW.DATA/a/new_ddbjhum.seq; ddbjpri.seq;
/db/DDBJNEW.DATA/a/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod2.seq;
ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq;
ddbjrod8.seq; ddbjrod9.seq; /db/DDBJNEW.DATA/a/new_ddbjrod.seq;
ddbjmam.seq; /db/DDBJNEW.DATA/a/new_ddbjmam.seq; ddbjvrt1.seq;
ddbjvrt2.seq; ddbjvrt3.seq; /db/DDBJNEW.DATA/a/new_ddbjvrt.seq;
ddbjinv1.seq; ddbjinv2.seq; ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq;
/db/DDBJNEW.DATA/a/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln2.seq;
ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq; ddbjpln6.seq; ddbjpln7.seq;
ddbjpln8.seq; /db/DDBJNEW.DATA/a/new_ddbjpln.seq; ddbjbct1.seq;
ddbjbct2.seq; ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq;
ddbjbct7.seq; /db/DDBJNEW.DATA/a/new_ddbjbct.seq; ddbjvrl1.seq;
ddbjvrl2.seq; ddbjvrl3.seq; /db/DDBJNEW.DATA/a/new_ddbjvrl.seq;
ddbjphg.seq; /db/DDBJNEW.DATA/a/new_ddbjphg.seq; ddbjuna.seq;
/db/DDBJNEW.DATA/a/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq;
ddbjgss11.seq; ddbjgss12.seq; ddbjgss13.seq; ddbjgss14.seq;
ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq;
ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq;
ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq;
ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq;
ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq;
ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq;
ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq; ddbjgss4.seq;
ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq;
ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq;
ddbjgss48.seq; ddbjgss49.seq; ddbjgss5.seq; ddbjgss50.seq;
ddbjgss51.seq; ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq;
ddbjgss55.seq; ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq;
ddbjgss59.seq; ddbjgss6.seq; ddbjgss60.seq; ddbjgss61.seq;
ddbjgss62.seq; ddbjgss63.seq; ddbjgss64.seq; ddbjgss65.seq;
ddbjgss66.seq; ddbjgss67.seq; ddbjgss68.seq; ddbjgss69.seq;
ddbjgss7.seq; ddbjgss70.seq; ddbjgss71.seq; ddbjgss72.seq;
ddbjgss73.seq; ddbjgss74.seq; ddbjgss75.seq; ddbjgss8.seq;
ddbjgss9.seq; /db/DDBJNEW.DATA/a/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss2.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg6.seq; ddbjhtg7.seq; ddbjhtg8.seq; ddbjhtg9.seq;
/db/DDBJNEW.DATA/a/new_ddbjhtg1.seq; ddbjpat1.seq; ddbjpat2.seq;
ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq; ddbjpat6.seq; ddbjpat7.seq;
ddbjpat8.seq; ddbjpat9.seq; /db/DDBJNEW.DATA/a/new_ddbjpat.seq;
ddbjsts1.seq; ddbjsts2.seq; ddbjsts3.seq;
/db/DDBJNEW.DATA/a/new_ddbjsts.seq; ddbjsyn.seq;
/db/DDBJNEW.DATA/a/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/a/new_est_atha1.seq; est_btra1.seq;
/db/DDBJNEW.DATA/a/new_est_btra1.seq; est_cele1.seq;
/db/DDBJNEW.DATA/a/new_est_cele1.seq; est_crei1.seq; est_cint1.seq;
/db/DDBJNEW.DATA/a/new_est_cint1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/a/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/a/new_est_dmel1.seq; est_ggal1.seq;
/db/DDBJNEW.DATA/a/new_est_ggal1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/a/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/a/new_est_hum1.seq;
est_hvul1.seq; /db/DDBJNEW.DATA/a/new_est_hvul1.seq; est_lesc1.seq;
/db/DDBJNEW.DATA/a/new_est_lesc1.seq; est_mous1.seq; est_mous2.seq;
est_mous3.seq; /db/DDBJNEW.DATA/a/new_est_mous1.seq; est_mtru1.seq;
/db/DDBJNEW.DATA/a/new_est_mtru1.seq; est_osat1.seq;
/db/DDBJNEW.DATA/a/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/a/new_est_rnor1.seq; est_stro1.seq; est_taes1.seq;
/db/DDBJNEW.DATA/a/new_est_taes1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/a/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/a/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
est_rest3.seq; /db/DDBJNEW.DATA/a/new_est_rest1.seq
32,313,473 sequences; U,636,548,840 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value N
AB000109|AB000109.1 Dictyostelium discoideum mitochondrial D... 478 0.0 2
D16466|D16466.1 Dictyostelium discoideum mitochondrial DNA. 478 0.0 2
AJ512794|AJ512794.1 Dictyostelium discoideum mRNA for LIS1 p... 242 3e-60 1
AJ512336|AJ512336.1 Dictyostelium discoideum mRNA for LIS1 p... 242 3e-60 1
CD094942|CD094942.1 ME1-0002T-M098-C03-U.B ME1-0002 Schistos... 44 2e-06 2
CD094741|CD094741.1 ME1-0002G-M106-G03-U.G ME1-0002 Schistos... 44 2e-06 2
U02970|U02970.1 Prototheca wickerhamii 263-11 complete mitoc... 42 6e-06 2
X68722|X68722.1 P.wickerhamii mitochondrial gene for large r... 42 6e-06 2
D89861|D89861.1 Cyanidioschyzon merolae mitochondrial DNA, c... 44 3e-04 2
AF163136|AF163136.1 Actinomadura fibrosa 23S ribosomal RNA g... 44 3e-04 2
AF134087|AF134087.1 Excellospora viridilutea 23S ribosomal R... 44 3e-04 2
AF163144|AF163144.1 Actinomadura yumaensis 23S ribosomal RNA... 44 3e-04 2
AF163141|AF163141.1 Actinomadura pelletieri 23S ribosomal RN... 44 3e-04 2
AF134082|AF134082.1 Actinomadura rugatobispora 23S ribosomal... 44 3e-04 2
AF134079|AF134079.1 Actinomadura luteofluorescens 23S riboso... 44 3e-04 2
AF134083|AF134083.1 Actinomadura verrucosospora 23S ribosoma... 44 3e-04 2
AF134085|AF134085.1 Actinomadura viridis 23S ribosomal RNA g... 44 3e-04 2
AF134081|AF134081.1 Actinomadura rubrobrunea 23S ribosomal R... 44 3e-04 2
AF134080|AF134080.1 Actinomadura macra 23S ribosomal RNA gen... 44 3e-04 2
AF134071|AF134071.1 Actinomadura atramentaria 23S ribosomal ... 44 3e-04 2
AF134084|AF134084.1 Actinomadura vinacea 23S ribosomal RNA g... 44 3e-04 2
AF134075|AF134075.1 Actinomadura echinospora 23S ribosomal R... 44 3e-04 2
AF116217|AF116217.1 Actinomadura coerulea 23S ribosomal RNA,... 44 3e-04 2
AF116236|AF116236.1 Thermomonospora curvata 23S ribosomal RN... 44 3e-04 2
AF116218|AF116218.1 Actinomadura formosensis 23S ribosomal R... 44 3e-04 2
AF116220|AF116220.1 Actinomadura madurae 23S ribosomal RNA, ... 44 3e-04 2
AF192140|AF192140.1 Microbispora indica 23S ribosomal RNA, p... 44 3e-04 2
AF116216|AF116216.1 Actinomadura citrea 23S ribosomal RNA, p... 44 3e-04 2
AF192148|AF192148.1 Nonomuraea ferruginea 23S ribosomal RNA ... 44 3e-04 2
AF116223|AF116223.1 Microbispora chromogenes 23S ribosomal R... 44 3e-04 2
AF116226|AF116226.1 Microbispora thermorosea 23S ribosomal R... 44 3e-04 2
AF116222|AF116222.1 Microbispora amethystogenes 23S ribosoma... 44 3e-04 2
AF116225|AF116225.1 Microbispora thermodiastatica 23S riboso... 44 3e-04 2
AF116221|AF116221.1 Microbispora aerata 23S ribosomal RNA, p... 44 3e-04 2
AF116224|AF116224.1 Microbispora rosea 23S ribosomal RNA, pa... 44 3e-04 2
AF163143|AF163143.1 Actinomadura umbrina 23S ribosomal RNA g... 44 3e-04 2
AF163140|AF163140.1 Actinomadura oligospora 23S ribosomal RN... 44 0.001 2
AF166114|AF166114.1 Mesostigma viride chloroplast DNA, compl... 34 0.002 6
X68893|X68893.1 Chloroplast Chlamydomonas indica rrnL gene, ... 46 0.002 2
X68913|X68913.1 Chloroplast C.moewusii rrnL gene, exon 1. 46 0.003 2
AJ294725|AJ294725.1 Astasia longa complete chloroplast genome. 46 0.005 5
CF922644|CF922644.1 gmrhRww24-13-T7_F02_1_006 Soybean root h... 52 0.006 1
CF922581|CF922581.1 gmrhRww24-12-T7_H07_1_049 Soybean root h... 52 0.006 1
AP003595|AP003595.1 Nostoc sp. PCC 7120 DNA, complete genome... 38 0.014 2
AP003587|AP003587.1 Nostoc sp. PCC 7120 DNA, complete genome... 38 0.014 2
AP003598|AP003598.1 Nostoc sp. PCC 7120 DNA, complete genome... 38 0.014 2
AP003588|AP003588.1 Nostoc sp. PCC 7120 DNA, complete genome... 38 0.014 2
AC135761|AC135761.2 Rattus norvegicus clone CH230-344I5, WOR... 36 0.015 2
AC128193|AC128193.3 Rattus norvegicus clone CH230-443G9, WOR... 36 0.015 2
AJ277126|AJ277126.1 Pilayella littoralis complete mitochondr... 38 0.016 2
Z48620|Z48620.1 P.littoralis lrn gene for 23S ribosomal RNA. 38 0.017 2
AF116562|AF116562.1 Thermomonospora chromogena strain ATCC43... 38 0.017 2
AF116563|AF116563.1 Thermomonospora chromogena strain ATCC43... 38 0.017 2
AF116561|AF116561.1 Thermomonospora chromogena strain ATCC43... 38 0.017 2
AF116560|AF116560.1 Thermomonospora chromogena strain ATCC43... 38 0.018 2
AR142739|AR142739.1 Sequence 3 from patent US 6204003. 36 0.018 2
AC100521|AC100521.1 Mus musculus clone RP23-145N19, LOW-PASS... 38 0.018 4
AF163137|AF163137.1 Actinomadura hibisca 23S ribosomal RNA g... 38 0.018 2
AF134074|AF134074.1 Actinomadura cremea subsp. rifamycini 23... 38 0.018 2
AF163146|AF163146.1 Spirillospora sp. 23S ribosomal RNA gene... 38 0.018 2
AF163145|AF163145.1 Spirillospora rubra 23S ribosomal RNA ge... 38 0.018 2
AF134088|AF134088.1 Spirillospora albida 23S ribosomal RNA g... 38 0.018 2
AF134072|AF134072.1 Actinomadura aurantiaca 23S ribosomal RN... 38 0.018 2
AF134086|AF134086.1 Actinocorallia herbida 23S ribosomal RNA... 38 0.018 2
AF134078|AF134078.1 Actinomadura libanotica 23S ribosomal RN... 38 0.018 2
AF134076|AF134076.1 Actinomadura fulvescens 23S ribosomal RN... 38 0.018 2
AF192146|AF192146.1 Streptosporangium corrugatum 23S ribosom... 38 0.018 2
AF192136|AF192136.1 Streptosporangium nondiastaticum 23S rib... 38 0.018 2
AF192141|AF192141.1 Streptosporangium album 23S ribosomal RN... 38 0.018 2
AF192138|AF192138.1 Nonomuraea africana 23S ribosomal RNA, p... 38 0.018 2
AF192137|AF192137.1 Nonomuraea spiralis 23S ribosomal RNA, p... 38 0.018 2
AF163138|AF163138.1 Actinomadura livida 23S ribosomal RNA ge... 38 0.018 2
AF134073|AF134073.1 Actinomadura cremea subsp. cremea 23S ri... 38 0.018 2
AF116219|AF116219.1 Actinomadura kijaniata 23S ribosomal RNA... 38 0.018 2
AF192150|AF192150.1 Streptosporangium claviforme 23S ribosom... 38 0.018 2
AF192143|AF192143.1 Streptosporangium longisporum 23S riboso... 38 0.018 2
AF192139|AF192139.1 Microtetraspora niveoalba 23S ribosomal ... 38 0.018 2
AF192147|AF192147.1 Microtetraspora fusca 23S ribosomal RNA,... 38 0.018 2
AF116227|AF116227.1 Nonomuria fastidiosa 23S ribosomal RNA, ... 38 0.018 2
AF192145|AF192145.1 Nonomuraea pusilla 23S ribosomal RNA gen... 38 0.018 2
AF192144|AF192144.1 Nonomuraea angiospora 23S ribosomal RNA,... 38 0.018 2
AF116234|AF116234.1 Streptosporangium pseudovulgare 23S ribo... 38 0.018 2
AF192142|AF192142.1 Streptosporangium vulgare 23S ribosomal ... 38 0.018 2
AF116235|AF116235.1 Streptosporangium roseum 23S ribosomal R... 38 0.018 2
AF116229|AF116229.1 Nonomuria polychroma 23S ribosomal RNA, ... 38 0.018 2
AF192149|AF192149.1 Nonomuraea roseola 23S ribosomal RNA, pa... 38 0.018 2
AF116232|AF116232.1 Streptosporangium amethystogenes 23S rib... 38 0.018 2
AF116231|AF116231.1 Nonomuria salmonea 23S ribosomal RNA, pa... 38 0.018 2
AF116230|AF116230.1 Nonomuria recticatena 23S ribosomal RNA,... 38 0.018 2
AF116233|AF116233.1 Streptosporangium fragile 23S ribosomal ... 38 0.018 2
AF116228|AF116228.1 Nonomuria helvata 23S ribosomal RNA, par... 38 0.018 2
L44123|L44123.1 Chlorococcum echinozygotum chloroplast large... 46 0.019 2
Z17234|Z17234.1 Chloroplast Chlamydomonas eugametos rrnL gene. 46 0.021 2
AF193903|AF193903.1 Cafeteria roenbergensis mitochondrial DN... 48 0.026 2
X04465|X04465.1 Marchantia polymorpha chloroplast genome DNA. 32 0.039 7
AL138958|AL138958.18 Human DNA sequence from clone RP11-206I... 48 0.039 4
AF538053|AF538053.1 Monosiga brevicollis mitochondrion, comp... 38 0.057 2
AF288092|AF288092.1 Naegleria gruberi mitochondrial DNA, com... 34 0.058 2
M55343|M55343.1 Frankia sp. 5S, 16S, and 23S ribosomal RNA g... 38 0.064 2
M88466|M88466.1 Frankia sp. rRNA operon with 5S, 16S and 23S... 38 0.064 2
>AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA,
complete sequence.
Length = 55564
Score = 478 bits (241), Expect(2) = 0.0
Identities = 241/241 (100%)
Strand = Plus / Plus
Query: 1 gcttaaatgacaaatttaaggtttaaggggaaaagataggagaaatagaagagagtagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18524 gcttaaatgacaaatttaaggtttaaggggaaaagataggagaaatagaagagagtagta 18583
Query: 61 agagaaaaatgtttataacggatctctatgcaaataagaaaaaggacgtacgaatgaacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18584 agagaaaaatgtttataacggatctctatgcaaataagaaaaaggacgtacgaatgaacg 18643
Query: 121 aaaggttatagggaaaatataaaaaagagttagcaatagcaattgaagatctataaatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18644 aaaggttatagggaaaatataaaaaagagttagcaatagcaattgaagatctataaatat 18703
Query: 181 ccgaagggagaccaagaaaaagaagaaacgcagtgaagtgaaacatcttagtaactgtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18704 ccgaagggagaccaagaaaaagaagaaacgcagtgaagtgaaacatcttagtaactgtag 18763
Query: 241 g 241
|
Sbjct: 18764 g 18764
Score = 287 bits (145), Expect(2) = 0.0
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 250 tcaaaagagatgcggtaagtagtggtgagcgaaagccgaggagagtaaaagtagaccatt 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18773 tcaaaagagatgcggtaagtagtggtgagcgaaagccgaggagagtaaaagtagaccatt 18832
Query: 310 agaagaaaactgaagaaactaggtggaaatccaaggcagaataaggtgaaagtccagtaa 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18833 agaagaaaactgaagaaactaggtggaaatccaaggcagaataaggtgaaagtccagtaa 18892
Query: 370 ggtaagggactaatggtaaagaagt 394
|||||||||||||||||||||||||
Sbjct: 18893 ggtaagggactaatggtaaagaagt 18917
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Hits to DB: 12,041,174
Number of Sequences: 32313473
Number of extensions: 12041174
Number of successful extensions: 1036184
Number of sequences better than 10.0: 683
length of query: 394
length of database: U,636,548,840
effective HSP length: 22
effective length of query: 372
effective length of database: T,925,652,434
effective search space: 13736342705448
effective search space used: 13736342705448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
[blastall] WARNING: [000.000] Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit
ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
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