Homology VHP536 vs Protein
Query= VHP536 (VHP536Q) /CSM/VH/VHP5-B/VHP536Q.Seq.d/
(1339 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U81156_1(U81156|pid:none) Dictyostelium discoideum RasGAP1 (rgaA... 402 e-110
(Q54K32) RecName: Full=Ras GTPase-activating-like protein rgaA; ... 402 e-110
AK302981_1(AK302981|pid:none) Homo sapiens cDNA FLJ52376 complet... 102 5e-20
AK303054_1(AK303054|pid:none) Homo sapiens cDNA FLJ50398 complet... 102 5e-20
U51903_1(U51903|pid:none) Human RasGAP-related protein (IQGAP2) ... 102 5e-20
AY351902_1(AY351902|pid:none) Homo sapiens testis specific IQ mo... 102 5e-20
BT072767_1(BT072767|pid:none) Salmo salar clone ssal-rgf-539-307... 99 6e-19
AB076897_1(AB076897|pid:none) Ciona intestinalis Ci-IQGAP mRNA f... 99 7e-19
FQ311441_131(FQ311441|pid:none) Sporisorium reilianum SRZ2 chrom... 96 4e-18
BC150958_1(BC150958|pid:none) Mus musculus IQ motif containing G... 94 2e-17
(Q3UQ44) RecName: Full=Ras GTPase-activating-like protein IQGAP2; 94 2e-17
AB093561_1(AB093561|pid:none) Xenopus laevis XIQGAP2 mRNA for IQ... 92 5e-17
BC151102_1(BC151102|pid:none) Mus musculus IQ motif containing G... 88 1e-15
BC156520_1(BC156520|pid:none) Synthetic construct Mus musculus c... 88 1e-15
CP000296_357(CP000296|pid:none) Cryptococcus gattii WM276 chromo... 87 3e-15
CR382366_2(CR382366|pid:none) Zebrafish DNA sequence from clone ... 87 3e-15
D29640_1(D29640|pid:none) Homo sapiens KIAA0051 mRNA, partial cds. 86 6e-15
(P46940) RecName: Full=Ras GTPase-activating-like protein IQGAP1... 86 6e-15
BC139731_1(BC139731|pid:none) Homo sapiens IQ motif containing G... 86 6e-15
AK298000_1(AK298000|pid:none) Homo sapiens cDNA FLJ55816 complet... 86 6e-15
AK129044_1(AK129044|pid:none) Mus musculus mRNA for mKIAA0051 pr... 85 1e-14
AB093560_1(AB093560|pid:none) Xenopus laevis XIQGAP1 mRNA for IQ... 85 1e-14
BC169057_1(BC169057|pid:none) Rattus norvegicus IQ motif contain... 85 1e-14
AK077354_1(AK077354|pid:none) Mus musculus adult male pituitary ... 85 1e-14
AY168005_1(AY168005|pid:none) Emericella nidulans Ras-GAP gene, ... 84 2e-14
AK029631_1(AK029631|pid:none) Mus musculus adult male testis cDN... 84 2e-14
BC146242_1(BC146242|pid:none) Bos taurus IQ motif containing GTP... 83 4e-14
AB105103_1(AB105103|pid:none) Homo sapiens IQGAP3 mRNA, complete... 82 9e-14
BC131536_1(BC131536|pid:none) Homo sapiens IQ motif containing G... 82 9e-14
AK122653_1(AK122653|pid:none) Homo sapiens cDNA FLJ16086 fis, cl... 82 9e-14
(Q86VI3) RecName: Full=Ras GTPase-activating-like protein IQGAP3... 82 9e-14
AM920427_1561(AM920427|pid:none) Penicillium chrysogenum Wiscons... 79 5e-13
FP929139_611(FP929139|pid:none) Leptosphaeria maculans JN3 lm_Su... 79 8e-13
AM270365_18(AM270365|pid:none) Aspergillus niger contig An16c013... 75 7e-12
AP007151_1071(AP007151|pid:none) Aspergillus oryzae RIB40 DNA, S... 75 1e-11
(O14188) RecName: Full=Ras GTPase-activating-like protein rng2; ... 74 2e-11
E87998(E87998)protein F09C3.1 [imported] - Caenorhabditis elegans 69 5e-10
AK033829_1(AK033829|pid:none) Mus musculus adult male epididymis... 67 2e-09
CU633901_222(CU633901|pid:none) Podospora anserina S mat+ genomi... 66 5e-09
CP003002_1019(CP003002|pid:none) Myceliophthora thermophila ATCC... 65 1e-08
CP003006_446(CP003006|pid:none) Myceliophthora thermophila ATCC ... 61 2e-07
CR382128_171(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 60 2e-07
AM920433_528(AM920433|pid:none) Penicillium chrysogenum Wisconsi... 56 5e-06
FP929072_195(FP929072|pid:none) Leptosphaeria maculans JN3 lm_Su... 50 3e-04
CP002372_1053(CP002372|pid:none) Thermococcus barophilus MP, com... 49 5e-04
AF139186_1(AF139186|pid:none) Hydra vulgaris IQGAP mRNA, partial... 48 0.001
AK042038_1(AK042038|pid:none) Mus musculus 3 days neonate thymus... 48 0.001
AK142813_1(AK142813|pid:none) Mus musculus 15 days embryo head c... 48 0.001
AK302510_1(AK302510|pid:none) Homo sapiens cDNA FLJ51769 partial... 47 0.002
(P33277) RecName: Full=GTPase-activating protein; AltName: Full=... 47 0.003
BC020549_1(BC020549|pid:none) Homo sapiens IQ motif containing G... 47 0.003
AK359416_1(AK359416|pid:none) Hordeum vulgare subsp. vulgare mRN... 47 0.003
BC052916_1(BC052916|pid:none) Mus musculus IQ motif containing G... 47 0.003
BT055091_1(BT055091|pid:none) Zea mays full-length cDNA clone ZM... 46 0.004
AL031187_1(AL031187|pid:none) Arabidopsis thaliana DNA chromosom... 45 0.007
AK175713_1(AK175713|pid:none) Arabidopsis thaliana mRNA for kine... 45 0.010
CP002687_678(CP002687|pid:none) Arabidopsis thaliana chromosome ... 45 0.010
BC037685_1(BC037685|pid:none) Mus musculus IQ motif containing G... 45 0.012
BC077377_1(BC077377|pid:none) Xenopus laevis hypothetical protei... 44 0.016
FN392319_895(FN392319|pid:none) Pichia pastoris GS115 chromosome... 43 0.036
HE605205_548(HE605205|pid:none) Candida parapsilosis strain CDC3... 42 0.062
CP000287_400(CP000287|pid:none) Cryptococcus gattii WM276 chromo... 42 0.062
AE017342_259(AE017342|pid:none) Cryptococcus neoformans var. neo... 42 0.062
FQ790308_13(FQ790308|pid:none) Botryotinia fuckeliana isolate T4... 42 0.11
AJ276372_1(AJ276372|pid:none) Sparus aurata partial mRNA for Ras... 41 0.14
CP001936_651(CP001936|pid:none) Thermoanaerobacter italicus Ab9,... 40 0.23
CP002466_1564(CP002466|pid:none) Thermoanaerobacter brockii subs... 40 0.23
FB882703_1(FB882703|pid:none) Sequence 101976 from Patent WO2008... 40 0.23
CP002991_756(CP002991|pid:none) Thermoanaerobacter wiegelii Rt8.... 40 0.23
CP002032_695(CP002032|pid:none) Thermoanaerobacter mathranii sub... 40 0.23
CP000232_254(CP000232|pid:none) Moorella thermoacetica ATCC 3907... 40 0.40
(Q5HPA2) RecName: Full=Extracellular matrix-binding protein ebh;... 39 0.68
(Q8CP76) RecName: Full=Extracellular matrix-binding protein ebh;... 39 0.68
CP000029_988(CP000029|pid:none) Staphylococcus epidermidis RP62A... 39 0.68
CP001087_1431(CP001087|pid:none) Desulfobacterium autotrophicum ... 39 0.68
CP001463_713(CP001463|pid:none) Thermococcus sibiricus MM 739, c... 39 0.68
CP001896_2887(CP001896|pid:none) Allochromatium vinosum DSM 180,... 39 0.89
HQ902517_1(HQ902517|pid:none) Anas platyrhynchos periplakin gene... 39 0.89
(Q97WH0) RecName: Full=DNA double-strand break repair Rad50 ATPa... 30 0.94
CP001747_112(CP001747|pid:none) Bacillus cereus biovar anthracis... 38 1.2
AC148405_25(AC148405|pid:none) Medicago truncatula clone mth2-37... 38 1.2
CP001080_384(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1... 38 1.2
CP001216_114(CP001216|pid:none) Bacillus anthracis str. CDC 684 ... 38 1.2
CP001406_107(CP001406|pid:none) Bacillus cereus 03BB102 plasmid ... 38 1.2
CP002776_1067(CP002776|pid:none) Thioalkalimicrobium cyclicum AL... 38 1.5
CP001318_69(CP001318|pid:none) Borrelia garinii Far04 plasmid Fa... 38 1.5
AE014818_49(AE014818|pid:none) Plasmodium falciparum 3D7 chromos... 38 1.5
CP002100_1961(CP002100|pid:none) Vulcanisaeta distributa DSM 144... 38 1.5
AE014297_818(AE014297|pid:none) Drosophila melanogaster chromoso... 38 1.5
CP002280_2034(CP002280|pid:none) Rothia dentocariosa ATCC 17931,... 38 1.5
CP002360_1027(CP002360|pid:none) Mahella australiensis 50-1 BON,... 37 2.0
CP002529_410(CP002529|pid:none) Vulcanisaeta moutnovskia 768-28,... 37 2.0
CP000444_336(CP000444|pid:none) Shewanella sp. MR-7, complete ge... 37 2.0
AB024032_2(AB024032|pid:none) Arabidopsis thaliana genomic DNA, ... 37 2.0
CU928178_64(CU928178|pid:none) Zygosaccharomyces rouxii strain C... 37 2.6
HE573027_468(HE573027|pid:none) Trypanosoma vivax Y486 annotated... 37 2.6
AM263198_292(AM263198|pid:none) Listeria welshimeri serovar 6b s... 37 2.6
FM204883_2083(FM204883|pid:none) Streptococcus equi subsp. equi ... 37 3.4
CP002906_316(CP002906|pid:none) Bacillus subtilis subsp. subtili... 37 3.4
(Q5R4L0) RecName: Full=Eukaryotic translation initiation factor ... 37 3.4
AJ786369_3(AJ786369|pid:none) Borrelia garinii lp54 plasmid, iso... 37 3.4
(Q6P9I7) RecName: Full=Structural maintenance of chromosomes pro... 37 3.4
AB238681_1(AB238681|pid:none) Arabidopsis thaliana CMS1 mRNA for... 36 4.4
DQ536150_1(DQ536150|pid:none) Populus trichocarpa clone 5737864 ... 36 4.4
CP002583_335(CP002583|pid:none) Marinomonas mediterranea MMB-1, ... 36 4.4
AE008691_499(AE008691|pid:none) Thermoanaerobacter tengcongensis... 36 4.4
AP011541_341(AP011541|pid:none) Bacillus subtilis subsp. natto B... 36 4.4
L06487_1(L06487|pid:none) Saccharomyces cerevisiae ZIP1 protein ... 36 4.4
HQ902521_1(HQ902521|pid:none) Trachemys scripta periplakin gene,... 36 4.4
AF401205_1(AF401205|pid:none) Homo sapiens IQGAP1 protein mRNA, ... 36 4.4
CR932234_1(CR932234|pid:none) Structural maintenance of chromoso... 36 5.8
AC150566_3(AC150566|pid:none) Medicago truncatula clone mth2-21o... 36 5.8
CP001147_1005(CP001147|pid:none) Thermodesulfovibrio yellowstoni... 36 5.8
CP002455_1581(CP002455|pid:none) Weeksella virosa DSM 16922, com... 36 5.8
CP002248_346(CP002248|pid:none) Agrobacterium sp. H13-3 circular... 36 5.8
AP008934_272(AP008934|pid:none) Staphylococcus saprophyticus sub... 36 5.8
AE007869_353(AE007869|pid:none) Agrobacterium tumefaciens str. C... 36 5.8
CP001185_1135(CP001185|pid:none) Thermosipho africanus TCF52B, c... 35 7.5
CP001899_1483(CP001899|pid:none) Ferroglobus placidus DSM 10642,... 35 7.5
AE009951_654(AE009951|pid:none) Fusobacterium nucleatum subsp. n... 35 7.5
JI164684_1(JI164684|pid:none) TSA: Ascaris suum ASCF_605_4467 mR... 35 7.5
CP001185_924(CP001185|pid:none) Thermosipho africanus TCF52B, co... 35 7.5
FR872582_1746(FR872582|pid:none) Simkania negevensis Z main chro... 35 7.6
HQ902528_1(HQ902528|pid:none) Alligator sinensis periplakin gene... 35 7.6
HQ902518_1(HQ902518|pid:none) Crocodylus siamensis periplakin ge... 35 7.6
CR382131_369(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 35 7.6
CP002542_1520(CP002542|pid:none) Fluviicola taffensis DSM 16823,... 30 9.0
CP000393_3385(CP000393|pid:none) Trichodesmium erythraeum IMS101... 35 9.9
CU928174_15(CU928174|pid:none) Zygosaccharomyces rouxii strain C... 35 9.9
CP002792_1537(CP002792|pid:none) Methanothermococcus okinawensis... 35 9.9
AF063866_194(AF063866|pid:none) Melanoplus sanguinipes entomopox... 35 9.9
FQ377874_904(FQ377874|pid:none) Mycoplasma mycoides subsp. capri... 35 9.9
CP002629_2768(CP002629|pid:none) Desulfobacca acetoxidans DSM 11... 35 9.9
AE009950_463(AE009950|pid:none) Pyrococcus furiosus DSM 3638, co... 35 9.9
HE580272_132(HE580272|pid:none) Naumovozyma dairenensis CBS 421 ... 35 9.9
(P40414) RecName: Full=Tropomyosin-2; &AY558235_1(AY558235|pid:... 35 9.9
HQ902525_1(HQ902525|pid:none) Scincella reevesii periplakin gene... 35 9.9
AM440046_1(AM440046|pid:none) Vitis vinifera contig VV78X271304.... 35 9.9
>U81156_1(U81156|pid:none) Dictyostelium discoideum RasGAP1 (rgaA)
gene, complete cds.
Length = 822
Score = 402 bits (1033), Expect = e-110
Identities = 210/230 (91%), Positives = 211/230 (91%)
Frame = +3
Query: 591 RALPTLPEQKDQSDEPPNLVDVLNKARQAEPSLEPEIKKILDNLKKLEEYNLTTSADNYS 770
RALPTLPEQKDQSDEPPNLVDVLNKARQA+PSLEPEIKKILDNLKKLEEYNLTTSADNYS
Sbjct: 593 RALPTLPEQKDQSDEPPNLVDVLNKARQADPSLEPEIKKILDNLKKLEEYNLTTSADNYS 652
Query: 771 SFLKAVALEVVNRAEIREQQKKEKQRLTTSLNNLRKHQKYLNEQIAQYNQYLQDCRLXXX 950
SFLKAVALEVVNRAEIREQQKKEKQRLTTSLNNLRKHQKYLNEQIAQYNQYLQDCRL
Sbjct: 653 SFLKAVALEVVNRAEIREQQKKEKQRLTTSLNNLRKHQKYLNEQIAQYNQYLQDCRLKHY 712
Query: 951 XXXXXXXXXXXXXXXXPFKFSFSELHKKGVIVDSEVPQITRKKIKFVISSDTVGVFDVSA 1130
PFKFSFSELHKKGVIVDSEVPQITRKKIKFVISSDTVGVFDVSA
Sbjct: 713 QNKSKKKKKGDGAKVGPFKFSFSELHKKGVIVDSEVPQITRKKIKFVISSDTVGVFDVSA 772
Query: 1131 KMAGIDVQTMRLELDDLLELNSIGTTTLELDQITLDVNMTIHLLNKLFLY 1280
KMAGIDVQTMRLELDDLLELNSIGTTTLELDQITLDVNMTIHLLNKLFLY
Sbjct: 773 KMAGIDVQTMRLELDDLLELNSIGTTTLELDQITLDVNMTIHLLNKLFLY 822
Score = 280 bits (715), Expect = 2e-73
Identities = 140/141 (99%), Positives = 140/141 (99%)
Frame = +1
Query: 157 DDTPEIVVPERKFLKEDEDYSVPFPVMRECLVLLLQSRRILRDMMYYRFKMDRFLSGNLS 336
DDTPEIVVPERKFLKEDEDYSVP PVMRECLVLLLQSRRILRDMMYYRFKMDRFLSGNLS
Sbjct: 32 DDTPEIVVPERKFLKEDEDYSVPIPVMRECLVLLLQSRRILRDMMYYRFKMDRFLSGNLS 91
Query: 337 VFEIQNLLHSQREDKESDWIAEIQELKRNLVSEVRRNHTLERDLNRLDKRIALLIKNRGN 516
VFEIQNLLHSQREDKESDWIAEIQELKRNLVSEVRRNHTLERDLNRLDKRIALLIKNRGN
Sbjct: 92 VFEIQNLLHSQREDKESDWIAEIQELKRNLVSEVRRNHTLERDLNRLDKRIALLIKNRGN 151
Query: 517 IQDVLADKAGLKAPKHKGDQK 579
IQDVLADKAGLKAPKHKGDQK
Sbjct: 152 IQDVLADKAGLKAPKHKGDQK 172
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 2,822,162,615
Number of extensions: 48206707
Number of successful extensions: 152715
Number of sequences better than 10.0: 138
Number of HSP's gapped: 152359
Number of HSP's successfully gapped: 184
Length of query: 446
Length of database: 1,732,582,204
Length adjustment: 135
Effective length of query: 311
Effective length of database: 1,010,438,449
Effective search space: 314246357639
Effective search space used: 314246357639
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Dictyostelium discoideum cDNA Project Home