Dictyostelium discoideum cDNA Clone VHO441

Sequence VHO441

AAAAATTTAA TGATAACCGG ACAATTAAGA AAAGAAAAAA AAATAATGGA
AGCAGGAATT TGGAAAAATA GAAAATGTAT ATAGTAAATT TAATATTACC
ATTAATAGGA AGTATAATAA CAGGAATTTT TGGACATAAA TTANGGAAAT
AGAATAAGTA TAAAAATAGC AGTTGGTTGT ATGATGTTAA CTGCAATATC
TAGTTTATAT ATTGGATATG AAATATTATT ATGTAATAGT GTAGTACATT
TTAAATTAGG AACGTGGATG CAAGTAGGAA GTTTAAATGT GGAATATGGT
TTATTATATG ATAGTTTAAC AAGTATAATG ATAATAGTCA TAACATGTAT
ATCAAGTATG GTACATTTAT ATTCGATGGA TTATATGAAA GAGGATCCAC
ATAAAACAAG ATTCTTTTCA TATTTATCGT TATTTACCTT TTTCATGATG
CTATTAGTAA CCGCCGATAA TTTTGTTCAA TTATTTTTTG GATGGGAAGG
AGTAGGAATA ATGTCTTATT TATTAATTAA TTTTTGGTAT ACAAGATTAC
AAGCAAATAA ATCCGCATTA AAAGCAGTAA TTTTAAAT-- --------AG
CTATATAGTA CAAACTATAA TACTAATTAT AGTTGTAGGA ATTTTTTCTT
TTATGACTGG ATTTATATAT ATGGAATTAT GTATAATAAT CGGAATCTTA
TATATTTGTC TACCTTCAAT CAAAATAGAT TAAAAGTAGT CAAGTAAGTG
GGTGTAAAAT GTTATTNTAA AAGTAAGCTT ATATAAGGGG AAAATAATAT
TAGTGGGCGC CCCTCCCCGC GGAAGCAAAT TTATGCGTTT CCGTGAATAT
TTCCGAGATT AGGTAGGTTG AAATGATTAG TAAAGTAATT TCAAAAAAGC
GTCCCGTATA CAAGCGCAGT GTATATATAG TTTAGGTAAC TCAGTTGGTT
AGAGTGAAAG ACTGAAAATC TTTAAGTCGG TGGTTCAAAT CCACTCCTAG
ACATTATGGA GTGAGCTGTG TATATTTAGA GAATAGGAAT AAATAAATAA
AAAGAATGAG ACAACGAAAA AATGTGACAA AATTTATAAA AAGAGCATAT
AGGGATATGG GAGAATTAAA ACAATATAAA CGATATACAA AGACACGATT
AAATATAATA TCGAATGAGG TATTTTTATT AAAGAATGAA TTATATCCGT
TACAACCAAA AAAAAAGAGA GGGAAAAGGG ATCAACAATT GAAAACAACT
TATACGAAAA AAAAATTAAA AAGAATCTTA TCATTAT

Translated Amino Acid Sequence VHO441

knlmitgqlrkekkimeagiwknrkci**i*yyh**ev**QEFLDINXGNRISIKIAVGC
MMLTAISSLYIGYEILLCNSVVHFKLGTWMQVGSLNVEYGLLYDSLTSIMIIVITCISSM
VHLYSMDYMKEDPHKTRFFSYLSLFTFFMMLLVTADNFVQLFFGWEGVGIMSYLLINFWY
TRLQANKSALKAVILN---

---LYSTNYNTNYSCRNFFFYDWIYIYGIMYNNRNLIYLSTFNQNRLKVVK*vgvkcyxk
skli*gennisgrpsprkqiyafp*ifprlgrlk*lvk*fqksvpytsavyi*fr*lswl
e*ktenl*vggsnplldime*avyi*rigink*ke*dnekm*qnl*kehigiwen*nnin
diqrhd*i*yrmryfy*rmnyirynqkkregkginn*kqlirkkn*kesyhy

Homology VHO441 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VHO441 (VHO441Q) /CSM/VH/VHO4-B/VHO441Q.Seq.d/                       1931   0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/              1096   0.0
VFI892 (VFI892Q) /CSM/VF/VFI8-D/VFI892Q.Seq.d/                        783   0.0
VSG556 (VSG556Q) /CSM/VS/VSG5-C/VSG556Q.Seq.d/                        232   1e-59
VSA843 (VSA843Q) /CSM/VS/VSA8-B/VSA843Q.Seq.d/                        198   1e-49
VSA467 (VSA467Q) /CSM/VS/VSA4-C/VSA467Q.Seq.d/                        196   6e-49
VSB356 (VSB356Q) /CSM/VS/VSB3-C/VSB356Q.Seq.d/                         58   4e-07
SHG739 (SHG739Q) /CSM/SH/SHG7-B/SHG739Q.Seq.d/                         44   0.005
FC-IC0976 (FC-IC0976Q) /CSM/FC-IC/FC-IC0976Q.Seq.d/                    44   0.005
FC-BS12 (FC-BS12Q) /CSM/FC/FC-BS/FC-BS12Q.Seq.d/                       42   0.021

Homology VHO441 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ426506) Dictyostelium discoideum cDNA clone:ddv59b12, 5' ...  1074   0.0    2
(U02291) Dictyostelium discoideum mitochondrial NADH:ubiquin...   880   0.0    3
(AF155828) Dictyostelium discoideum NADH dehydrogenase subun...   880   0.0    6
(AB000109) Dictyostelium discoideum mitochondrial DNA, compl...   880   0.0    3
(BJ445367) Dictyostelium discoideum cDNA clone:ddv59b12, 3' ...   864   0.0    4
(BJ432491) Dictyostelium discoideum cDNA clone:ddv18h24, 3' ...   539   0.0    5
(DQ336395) Dictyostelium citrinum mitochondrion, complete ge...   626   0.0    6
(AY700145) Polysphondylium pallidum mitochondrion DNA, compl...   268   8e-94  7
(EU275726) Polysphondylium pallidum strain PN500 mitochondri...   244   2e-84  7
(EU275727) Dictyostelium fasciculatum strain SH3 mitochondri...   141   4e-75  9

Homology VHO441 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q34313) RecName: Full=NADH-ubiquinone oxidoreductase chain 5;  ...   298   4e-86
EU275727_45(EU275727|pid:none) Dictyostelium fasciculatum strain...   226   6e-62
AY700145_26(AY700145|pid:none) Polysphondylium pallidum mitochon...   230   5e-61
DQ186202_3(DQ186202|pid:none) Thalassiosira pseudonana mitochond...   182   1e-46
GU002153_29(GU002153|pid:none) Synedra acus mitochondrion, compl...   182   8e-46
AF007261_56(AF007261|pid:none) Reclinomonas americana mitochondr...   179   2e-45
EU237485_13(EU237485|pid:none) Igernella notabilis mitochondrion...   186   3e-45
AY494079_30(AY494079|pid:none) Fucus vesiculosus mitochondrion, ...   178   4e-45
(P26849) RecName: Full=NADH-ubiquinone oxidoreductase chain 5;  ...   177   9e-45
FJ999996_1(FJ999996|pid:none) Pleurozia purpurea mitochondrion, ...   173   1e-43

Homology VHO441 vs Genome