Homology VHO441 vs DNA
Query= VHO441 (VHO441Q) /CSM/VH/VHO4-B/VHO441Q.Seq.d/
(1287 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ426506) Dictyostelium discoideum cDNA clone:ddv59b12, 5' ... 1074 0.0 2
(U02291) Dictyostelium discoideum mitochondrial NADH:ubiquin... 880 0.0 3
(AF155828) Dictyostelium discoideum NADH dehydrogenase subun... 880 0.0 6
(AB000109) Dictyostelium discoideum mitochondrial DNA, compl... 880 0.0 3
(BJ445367) Dictyostelium discoideum cDNA clone:ddv59b12, 3' ... 864 0.0 4
(BJ432491) Dictyostelium discoideum cDNA clone:ddv18h24, 3' ... 539 0.0 5
(DQ336395) Dictyostelium citrinum mitochondrion, complete ge... 626 0.0 6
(AY700145) Polysphondylium pallidum mitochondrion DNA, compl... 268 8e-94 7
(EU275726) Polysphondylium pallidum strain PN500 mitochondri... 244 2e-84 7
(EU275727) Dictyostelium fasciculatum strain SH3 mitochondri... 141 4e-75 9
(AU266621) Dictyostelium discoideum vegetative cDNA clone:VS... 180 5e-62 3
(AU261779) Dictyostelium discoideum vegetative cDNA clone:VS... 147 5e-52 3
(AU261498) Dictyostelium discoideum vegetative cDNA clone:VS... 196 1e-45 1
(AY534144) Saprolegnia ferax strain ATCC 36051 mitochondion,... 78 3e-26 5
(AY898627) Phytophthora infestans haplotype IIa mitochondrio... 88 4e-23 2
(AY898628) Phytophthora infestans haplotype IIb mitochondrio... 88 4e-23 2
(U17009) Phytophthora infestans mitochondrion, complete genome. 88 4e-23 2
(AY894835) Phytophthora infestans haplotype Ia mitochondrion... 88 4e-23 2
(CV949022) PVrpvb_12977 zoospores, purified Phytophthora inf... 88 4e-23 2
(CV948914) PVrpvb_12856 zoospores, purified Phytophthora inf... 88 4e-23 2
(BJ414341) Dictyostelium discoideum cDNA clone:ddv18h24, 5' ... 121 7e-23 1
(CV948390) PVrpvb_11853 zoospores, purified Phytophthora inf... 80 9e-21 2
(AF288092) Naegleria gruberi mitochondrial DNA, complete gen... 56 3e-19 3
(EK372318) 1095469423035 Global-Ocean-Sampling_GS-31-01-01-1... 60 2e-15 2
(DQ832717) Phytophthora sojae mitochondrion, complete genome. 94 2e-14 1
(DQ832718) Phytophthora ramorum mitochondrion, complete genome. 86 6e-13 4
(EU427470) Phytophthora ramorum strain CBS 101553 mitochondr... 86 7e-13 4
(EK131506) 1093009829247 Global-Ocean-Sampling_GS-31-01-01-1... 74 1e-12 2
(AY267353) Chara vulgaris mitochondrion, complete genome. 60 3e-12 4
(DQ365900) Oltmannsiellopsis viridis mitochondrion, complete... 72 5e-12 2
(EL779295) PUND027TV Pythium ultimum ESTs Pythium ultimum DA... 56 6e-12 2
(DQ640127) Plagiobryum pseudotriquetrum NADH dehydrogenase s... 58 3e-11 3
(AY908353) Anomobryum julaceum isolate A33 NADH dehydrogenas... 58 3e-11 3
(DQ640114) Plagiobryum zierii NADH dehydrogenase subunit 5 (... 58 3e-11 3
(DQ640118) Bryum barnesii NADH dehydrogenase subunit 5 (nad5... 58 3e-11 3
(DQ889457) Placozoan sp. BZ49 mitochondrion, complete genome. 82 6e-11 1
(EK016282) 1092955235416 Global-Ocean-Sampling_GS-31-01-01-1... 66 8e-11 2
(AF538048) Amoebidium parasiticum mitochondrial chromosome 0... 80 2e-10 1
(AF287134) Ochromonas danica mitochondrial DNA, complete gen... 60 3e-10 2
(EJ369283) 1092963717570 Global-Ocean-Sampling_GS-28-01-01-1... 60 3e-10 2
(EF081250) Oscarella carmela mitochondrion, complete genome. 40 4e-10 3
(AF295546) Malawimonas jakobiformis mitochondrial DNA, compl... 78 9e-10 1
(EC721463) MJE00001743 Malawimonas jakobiformis Home made (1... 78 9e-10 1
(Z98952) Calymperes erodes mitochondrial DNA nad5 gene. 66 1e-09 2
(AY524536) Hypnodendron spininervium NADH dehydrogenase subu... 58 1e-09 2
(AY524530) Spiridens camusii NADH dehydrogenase subunit 5 (N... 58 1e-09 2
(AY524535) Hypnodendron diversifolium NADH dehydrogenase sub... 58 1e-09 2
(DQ200897) Hampeella alaris NADH dehydrogenase subunit 5 (Na... 58 1e-09 2
(AY524519) Hampeella alaris NADH dehydrogenase subunit 5 (ND... 58 1e-09 2
(AY618402) Orthotrichum assimile NADH dehydrogenase subunit ... 58 1e-09 2
(DQ200899) Hampeella pallens NADH dehydrogenase subunit 5 (N... 58 1e-09 2
(DQ200898) Hampeella concavifolia NADH dehydrogenase subunit... 58 1e-09 2
(AY524538) Hypnodendron subspininervium NADH dehydrogenase s... 58 1e-09 2
(AY524531) Hypnodendron camptotheca NADH dehydrogenase subun... 58 1e-09 2
(AY524523) Hypnodendron comatulum NADH dehydrogenase subunit... 58 1e-09 2
(AY524537) Hypnodendron dendroides NADH dehydrogenase subuni... 58 1e-09 2
(AY524521) Hypnodendron comosum NADH dehydrogenase subunit 5... 58 1e-09 2
(AY608582) Cyrtopus setosus NADH dehydrogenase subunit 5 (ND... 58 1e-09 2
(AY608580) Bescherellia cryphaeoides NADH dehydrogenase subu... 58 1e-09 2
(AY608578) Bescherellia elegantissima NADH dehydrogenase sub... 58 1e-09 2
(EJ581051) 1092960165953 Global-Ocean-Sampling_GS-29-01-01-1... 54 5e-09 2
(EK029049) 1092955391850 Global-Ocean-Sampling_GS-31-01-01-1... 54 5e-09 2
(EJ580882) 1092960163073 Global-Ocean-Sampling_GS-29-01-01-1... 54 5e-09 2
(DQ640125) Bryum dyffrynense NADH dehydrogenase subunit 5 (n... 50 7e-09 3
(AJ622817) Sphagnum fallax mitochondrial partial nad5 gene f... 54 2e-08 2
(AJ001225) Sphagnum fallax mitochondrial DNA nad5 gene, part... 54 2e-08 2
(AY908935) Schlotheimia torquata isolate BG1139 NADH dehydro... 58 2e-08 2
(AY618409) Schlotheimia torquata NADH dehydrogenase subunit ... 58 2e-08 2
(EK322243) 1095462433199 Global-Ocean-Sampling_GS-31-01-01-1... 52 2e-08 2
(EK428110) 1095516055387 Global-Ocean-Sampling_GS-31-01-01-1... 60 2e-08 2
(ER373252) 1093025207150 Global-Ocean-Sampling_GS-34-01-01-1... 66 3e-08 2
(ER377341) 1093042165382 Global-Ocean-Sampling_GS-34-01-01-1... 66 3e-08 2
(EK048997) 1092959669785 Global-Ocean-Sampling_GS-31-01-01-1... 58 7e-08 2
(EK033320) 1092957442468 Global-Ocean-Sampling_GS-31-01-01-1... 58 7e-08 2
(AF538053) Monosiga brevicollis mitochondrion, complete genome. 54 1e-07 9
(CR954200) Ostreococcus tauri mitochondrion, complete genome. 70 2e-07 1
(EK188125) 1095460009056 Global-Ocean-Sampling_GS-31-01-01-1... 70 2e-07 1
(AJ622819) Ulota crispa mitochondrial partial nad5 gene for ... 58 3e-07 2
(AJ622821) Rhacocarpus purpurascens mitochondrial partial na... 58 3e-07 2
(AJ291562) Tortula latifolia mitochondrial partial nad5 gene... 58 3e-07 2
(Z98957) Pottia truncata mitochondrial DNA nad5 gene. 58 3e-07 2
(AJ001229) Atrichum undulatum mitochondrial DNA nad5 gene, p... 58 3e-07 2
(AJ291554) Pogonatum urnigerum mitochondrial partial nad5 ge... 58 3e-07 2
(AJ001228) Polytrichum formosum mitochondrial DNA nad5 gene,... 58 3e-07 2
(AJ001227) Andreaea rupestris mitochondrial DNA nad5 gene, p... 58 3e-07 2
(AJ291568) Ulota crispa mitochondrial partial nad5 gene for ... 58 3e-07 2
(AJ291563) Cinclidotus riparius mitochondrial partial nad5 g... 58 3e-07 2
(AJ004809) Thuidium tamariscinum mitochondrial nad5 gene, pa... 50 3e-07 2
(AY908942) Desmotheca apiculata isolate BG1238 NADH dehydrog... 58 3e-07 2
(AY908621) Matteria gracillima isolate BG1170 NADH dehydroge... 58 3e-07 2
(Z98961) Bartramia halleriana mitochondrial DNA nad5 gene. 58 3e-07 2
(Z98956) Dicranum scoparium mitochondrial DNA nad5 gene. 58 3e-07 2
(AJ291564) Aulacomnium androgynum mitochondrial partial nad5... 58 3e-07 2
(Z98965) Plagiomnium cuspidatum mitochondrial DNA nad5 gene. 58 3e-07 2
(Z98962) Plagiopus oederi mitochondrial DNA nad5 gene. 58 3e-07 2
(Z98953) Syrrhopodon spec. mitochondrial DNA nad5 gene. 58 3e-07 2
(AJ291565) Pohlia nutans mitochondrial partial nad5 gene for... 58 3e-07 2
(AJ291559) Ditrichum cylindricum mitochondrial partial nad5 ... 58 3e-07 2
(AJ291557) Dichodontium pellucidum mitochondrial partial nad... 58 3e-07 2
(Z98967) Rhacocarpus purpurascens mitochondrial DNA nad5 gene. 58 3e-07 2
>(BJ426506) Dictyostelium discoideum cDNA clone:ddv59b12, 5' end,
single read.
Length = 588
Score = 1074 bits (542), Expect(2) = 0.0
Identities = 545/545 (100%)
Strand = Plus / Plus
Query: 44 taatggaagcaggaatttggaaaaatagaaaatgtatatagtaaatttaatattaccatt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 taatggaagcaggaatttggaaaaatagaaaatgtatatagtaaatttaatattaccatt 103
Query: 104 aataggaagtataataacaggaatttttggacataaattanggaaatagaataagtataa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 aataggaagtataataacaggaatttttggacataaattanggaaatagaataagtataa 163
Query: 164 aaatagcagttggttgtatgatgttaactgcaatatctagtttatatattggatatgaaa 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 aaatagcagttggttgtatgatgttaactgcaatatctagtttatatattggatatgaaa 223
Query: 224 tattattatgtaatagtgtagtacattttaaattaggaacgtggatgcaagtaggaagtt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tattattatgtaatagtgtagtacattttaaattaggaacgtggatgcaagtaggaagtt 283
Query: 284 taaatgtggaatatggtttattatatgatagtttaacaagtataatgataatagtcataa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 taaatgtggaatatggtttattatatgatagtttaacaagtataatgataatagtcataa 343
Query: 344 catgtatatcaagtatggtacatttatattcgatggattatatgaaagaggatccacata 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 catgtatatcaagtatggtacatttatattcgatggattatatgaaagaggatccacata 403
Query: 404 aaacaagattcttttcatatttatcgttatttacctttttcatgatgctattagtaaccg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aaacaagattcttttcatatttatcgttatttacctttttcatgatgctattagtaaccg 463
Query: 464 ccgataattttgttcaattattttttggatgggaaggagtaggaataatgtcttatttat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ccgataattttgttcaattattttttggatgggaaggagtaggaataatgtcttatttat 523
Query: 524 taattaatttttggtatacaagattacaagcaaataaatccgcattaaaagcagtaattt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 taattaatttttggtatacaagattacaagcaaataaatccgcattaaaagcagtaattt 583
Query: 584 taaat 588
|||||
Sbjct: 584 taaat 588
Score = 67.9 bits (34), Expect(2) = 0.0
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 aaaaatttaatgataaccggacaattaagaaaag 34
||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaaatttaatgataaccggacaattaagaaaag 34
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,507,145,601
Number of extensions: 95621044
Number of successful extensions: 7666753
Number of sequences better than 10.0: 934
Length of query: 1287
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1263
Effective length of database: 97,308,875,965
Effective search space: 122901110343795
Effective search space used: 122901110343795
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home