Dictyostelium discoideum cDNA Clone VHO340

Sequence VHO340

AATGATGATT TTTCTTGTGA TGATGTTAAC GAATGTTTAG ATGGTAAAAA
TGGTGGATGT CAACATAATT GTACAAATTC AATTGGTGGT TTTAGTTGTT
CATGTATGCC AGGTTATAGT TTGAATGGTT TCTCTTGTGA TGATATTAAT
GAATGTCAAG ATGGTAAAAA TGGTGGATGC CAACAAAATT GTAAAAATTC
AATTGGCAGT TTTGAATGCT CATGTGATCC AGGTTATATT TCAAATGGTT
TCTCTTGTCA AGATATTAAT GAATGCCAAA CAGGAGATAA TAAATGTGTT
GGAGAGTATA CTTCTTGTCA AAATACAAAT GGTTCATATT TATGTGTTTG
TCCATCTAAT GGATATTCAA ATAATGGTAC CTACTGTGAA GATATTGATG
AGTGTTTAGA TGGTAATAAT GGTGGATGTA GTCAAATATG TAAAAATTCA
ATTGGTAGCT TTGATTGTTC ATGTCAACCA GGTTATAATG TAAATGGTTT
CTCTTGTGAT GATATTAATG AATGCCAAAC AGGTGATAAT AAATGTGTTG
GAGAGTTTAC TTCTTGTCAA AATACTGCTG GCTCTTATTT ATGTGTTTGC
CCATCCAATG GGTTTTCAAA TAATGGTACC TATTGTGAGG ATATTGATGA
ATGTTTANAT GGTAAAAATG GTGGATGCCA CCAAAATTGT AAAAATTCAA
TTGGTAGTTT TGAATGCTCA TGTGATCCAG GTTATAATTT AAATGGGTTA
TCCTGTGATG ATATTAATGA ATGCNAAACC CAGATACAAA TGTTTTGGNG
AATTACCTTN TGNCNAAA-- --------AT CAAATGCAAA ATGGAATGGT
AGTTCAAATG CTCCCCAAAT CCAATGGATA TTCAATATTA CATTGGAAAA
TAAATCATAT TTAGAAGCAA CTTTTGAATA CTTTGAAAAA TCTAGAAACA
TTACATTTGC ATCAAGTTCA TTCATTATTC CAGCAGAATC ATTAAAACTA
TCATTTAAAA CAATGAAATG GCCATTCCGT TCAAAATTAA GTTCATTAAG
AGTTGTCGTT CAAACAGATA CAATCGTTAA AAATGAAGAT GTTGAAAAAT
GTTCAATCAG TAACTCTGTT ACTACCACCT ATAATCAACA CCTTTGGAGT
ACAACTGAAA ACTCTGAATC TGGCATGGTT GCAAGATTTG TATCTTTGGC
TGAATTGGAT TCCACCACTC CAATCACTGC CAACATCGAA GATTTATCAT
ATAGCTCAAA TAAAAAAACT TCAATTATTG GTATTTCAGT TCCATACTTT
TCAAAACAAT CAATTATTGA CCCAGATTTT GGAATGCTTT TGAATGTTGA
AAATAAAAAA ACAGGTGATT GCGAATCAGA TGATAAAGCA AATTGGAAAC
TTGCCACTGG ACTTTCTATT GGTGCTGGTG CCACAGTTTG TTTAGCTGGT
TTGGCTTCTT TCCTTTATAG AAAGAAGAAA AAAGAGAAAA AATTTTTAGA
GGTTTAAGTA AACGTTAATT GTTTCTACAA TAAATAAATA TATAATTTAT
AATTATAAA

Translated Amino Acid Sequence VHO340

NDDFSCDDVNECLDGKNGGCQHNCTNSIGGFSCSCMPGYSLNGFSCDDINECQDGKNGGC
QQNCKNSIGSFECSCDPGYISNGFSCQDINECQTGDNKCVGEYTSCQNTNGSYLCVCPSN
GYSNNGTYCEDIDECLDGNNGGCSQICKNSIGSFDCSCQPGYNVNGFSCDDINECQTGDN
KCVGEFTSCQNTAGSYLCVCPSNGFSNNGTYCEDIDECLXGKNGGCHQNCKNSIGSFECS
CDPGYNLNGLSCDDINECXTQIQMFWXITXXX---

---SNAKWNGSSNAPQIQWIFNITLENKSYLEATFEYFEKSRNITFASSSFIIPAESLKL
SFKTMKWPFRSKLSSLRVVVQTDTIVKNEDVEKCSISNSVTTTYNQHLWSTTENSESGMV
ARFVSLAELDSTTPITANIEDLSYSSNKKTSIIGISVPYFSKQSIIDPDFGMLLNVENKK
TGDCESDDKANWKLATGLSIGAGATVCLAGLASFLYRKKKKEKKFLEV*vnvncfynk*i
ynl*l*

Homology VHO340 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VHO340 (VHO340Q) /CSM/VH/VHO3-B/VHO340Q.Seq.d/                       2732   0.0
VHH326 (VHH326Q) /CSM/VH/VHH3-B/VHH326Q.Seq.d/                       1005   0.0
VHI120 (VHI120Q) /CSM/VH/VHI1-A/VHI120Q.Seq.d/                         54   7e-06
VHM873 (VHM873Q) /CSM/VH/VHM8-D/VHM873Q.Seq.d/                         46   0.002
FC-IC0839 (FC-IC0839Q) /CSM/FC-IC/FC-IC0839Q.Seq.d/                    44   0.006
CHP833 (CHP833Q) /CSM/CH/CHP8-B/CHP833Q.Seq.d/                         44   0.006
AHC778 (AHC778Q) /CSM/AH/AHC7-D/AHC778Q.Seq.d/                         44   0.006
SSL643 (SSL643Q) /CSM/SS/SSL6-B/SSL643Q.Seq.d/                         42   0.025
SSI653 (SSI653Q) /CSM/SS/SSI6-C/SSI653Q.Seq.d/                         42   0.025
SSB380 (SSB380Q) /CSM/SS/SSB3-D/SSB380Q.Seq.d/                         42   0.025

Homology VHO340 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ426563) Dictyostelium discoideum cDNA clone:ddv59p09, 5' ...  1586   0.0    1
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...  1515   0.0    2
(BJ445438) Dictyostelium discoideum cDNA clone:ddv59p09, 3' ...   858   0.0    4
(BJ422228) Dictyostelium discoideum cDNA clone:ddv45d07, 5' ...   995   0.0    2
(BJ440968) Dictyostelium discoideum cDNA clone:ddv45d07, 3' ...   498   0.0    4
(BC151354) Bos taurus latent transforming growth factor beta...    50   6e-09  4
(BJ441556) Dictyostelium discoideum cDNA clone:ddv47g05, 3' ...    54   5e-08  3
(AK036047) Mus musculus 16 days neonate cerebellum cDNA, RIK...    42   3e-07  4
(BC094612) Mus musculus latent transforming growth factor be...    42   1e-06  4
(BJ444553) Dictyostelium discoideum cDNA clone:ddv56b20, 3' ...    46   1e-06  4

Homology VHO340 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso...   591   e-167
DQ900937_1(DQ900937|pid:none) Ciona intestinalis gamma-carboxygl...   213   2e-53
AB041857_1(AB041857|pid:none) Ciona intestinalis mRNA for Ci-MET...   211   9e-53
AF007248_1(AF007248|pid:none) Mus musculus mutant fibrillin-1 (F...   196   4e-48
AF135059_1(AF135059|pid:none) Rattus norvegicus fibrillin-1 mRNA...   196   4e-48
AL844547_6(AL844547|pid:none) Mouse DNA sequence from clone RP23...   196   4e-48
AL583887_2(AL583887|pid:none) Mouse DNA sequence from clone RP23...   195   7e-48
AM114769_1(AM114769|pid:none) Platynereis dumerilii partial mRNA...   194   9e-48
(Q61554) RecName: Full=Fibrillin-1; Flags: Precursor;  &A55624(A...   194   9e-48
L13923_1(L13923|pid:none) Homo sapiens fibrillin mRNA, complete ...   194   1e-47

Homology VHO340 vs Genome