Homology VHN290 vs Protein
Query= VHN290 (VHN290Q) /CSM/VH/VHN2-D/VHN290Q.Seq.d/
(1384 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q54YG8) RecName: Full=Protein rliB; AltName: Full=Repressed aft... 493 e-138
AC116984_193(AC116984|pid:none) Dictyostelium discoideum chromos... 322 3e-86
(Q54XG9) RecName: Full=G8 domain-containing protein DDB_G0278975... 315 5e-84
(Q54L52) RecName: Full=G8 domain-containing protein DDB_G0286897... 314 7e-84
(Q54LY1) RecName: Full=G8 domain-containing protein DDB_G0286311... 307 1e-81
CP001576_63(CP001576|pid:none) Micromonas sp. RCC299 chromosome ... 89 8e-16
(Q54KF6) RecName: Full=Protein DDB_G0287365; Flags: Precursor; 77 2e-12
AY219181_1(AY219181|pid:none) Homo sapiens fibrocystin L mRNA, c... 75 1e-11
(Q86WI1) RecName: Full=Fibrocystin-L; AltName: Full=Polycystic k... 75 1e-11
FN357448_23(FN357448|pid:none) Schistosoma mansoni genome sequen... 75 1e-11
DQ680070_1(DQ680070|pid:none) Danio rerio polycystic kidney and ... 73 4e-11
EU864430_1(EU864430|pid:none) Danio rerio polycystic kidney and ... 72 8e-11
CP000909_1416(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 71 1e-10
BX649562_2(BX649562|pid:none) Zebrafish DNA sequence from clone ... 71 2e-10
CP001743_1348(CP001743|pid:none) Meiothermus ruber DSM 1279, com... 69 8e-10
EU643473_4(EU643473|pid:none) Adineta vaga clone Av240_A TPR rep... 68 1e-09
(Q80ZA4) RecName: Full=Fibrocystin-L; AltName: Full=Polycystic k... 65 1e-08
CP000804_2872(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 65 1e-08
CP002042_2009(CP002042|pid:none) Meiothermus silvanus DSM 9946, ... 61 1e-07
(Q5FWI3) RecName: Full=Transmembrane protein 2; &BC089353_1(BC0... 60 3e-07
AF480064_1(AF480064|pid:none) Homo sapiens polycystic kidney and... 56 4e-06
AY092083_1(AY092083|pid:none) Homo sapiens TIG multiple domains-... 56 4e-06
(P08F94) RecName: Full=Fibrocystin; AltName: Full=Polycystic kid... 56 4e-06
BC140773_1(BC140773|pid:none) Homo sapiens transmembrane protein... 55 1e-05
(Q9P2D5) RecName: Full=Transmembrane protein 2; &AB384202_1(AB3... 55 1e-05
AY130764_1(AY130764|pid:none) Mus musculus polyductin (Pkhd1) mR... 52 6e-05
AY438374_1(AY438374|pid:none) Mus musculus PKHD1 (Pkhd1) mRNA, c... 52 6e-05
HQ997922_1(HQ997922|pid:none) Danio rerio transmembrane protein ... 52 6e-05
AK149803_1(AK149803|pid:none) Mus musculus bone marrow macrophag... 50 3e-04
BC020256_1(BC020256|pid:none) Homo sapiens KIAA1199, mRNA (cDNA ... 49 7e-04
AB103331_1(AB103331|pid:none) Mus musculus mRNA for KIAA1199 pro... 47 0.003
CP001280_1719(CP001280|pid:none) Methylocella silvestris BL2, co... 45 0.013
CP001848_388(CP001848|pid:none) Pirellula staleyi DSM 6068, comp... 40 0.25
CP001850_806(CP001850|pid:none) Clostridiales genomosp. BVAB3 st... 37 2.7
CP001959_1102(CP001959|pid:none) Brachyspira murdochii DSM 12563... 36 6.1
AF138341_1(AF138341|pid:none) HIV-1 p7c044-61 from USA envelope ... 36 6.1
CP001769_1801(CP001769|pid:none) Spirosoma linguale DSM 74, comp... 36 6.1
AM435789_2(AM435789|pid:none) Vitis vinifera contig VV78X050972.... 36 6.1
CP001744_459(CP001744|pid:none) Planctomyces limnophilus DSM 377... 35 7.9
FJ623477_8(FJ623477|pid:none) HIV-1 isolate 06KECst_021 from Ken... 35 7.9
>(Q54YG8) RecName: Full=Protein rliB; AltName: Full=Repressed after
Legionella infection protein B; Flags: Precursor;
Length = 1117
Score = 493 bits (1270), Expect = e-138
Identities = 232/249 (93%), Positives = 232/249 (93%)
Frame = +3
Query: 636 PXXXXGHKIVPDSGSSRFFNFIDWDGSLVGTHVPTIVGSHEKWWSYDDSKCTYNNDWTIW 815
P GHKIVPDSGSSRFFNFIDWDGSLVGTHVPTIVGSHEKWWSYDDSKCTYNNDWTIW
Sbjct: 853 PAQIIGHKIVPDSGSSRFFNFIDWDGSLVGTHVPTIVGSHEKWWSYDDSKCTYNNDWTIW 912
Query: 816 VCQKGSKSVGNIEFWVPNLIIRGEQNEGDSFVGSVSLFGDGITDVRKTAITRNAGITGIT 995
VCQKGSKSVGNIEFWVPNLIIRGEQNEGDSFVGSVSLFGDGITDVRKTAITRNAGITGIT
Sbjct: 913 VCQKGSKSVGNIEFWVPNLIIRGEQNEGDSFVGSVSLFGDGITDVRKTAITRNAGITGIT 972
Query: 996 STGWMLWLDGGSPTYLXXXXXXXXXXXXIFLAIPYPPGTTFTISTENKWAWQNAYGFNCT 1175
STGWMLWLDGGSPTYL IFLAIPYPPGTTFTISTENKWAWQNAYGFNCT
Sbjct: 973 STGWMLWLDGGSPTYLQVWAAQVAYQQYIFLAIPYPPGTTFTISTENKWAWQNAYGFNCT 1032
Query: 1176 LASSAAEVRSSNGTKYYFDQTHLFVKIVNPVLTGSPAESFNRGGTKIDDVYWEYIYHINA 1355
LASSAAEVRSSNGTKYYFDQTHLFVKIVNPVLTGSPAESFNRGG KIDDVYWEYIYHINA
Sbjct: 1033 LASSAAEVRSSNGTKYYFDQTHLFVKIVNPVLTGSPAESFNRGGAKIDDVYWEYIYHINA 1092
Query: 1356 TNPNVSPNQ 1382
TNPNVSPNQ
Sbjct: 1093 TNPNVSPNQ 1101
Score = 424 bits (1089), Expect = e-117
Identities = 208/210 (99%), Positives = 208/210 (99%)
Frame = +1
Query: 10 KASVXLDPQDLXTCPYLASDLVHWHNPSTWSNNLVPQPNENITIPAGKRVLISPCSISQT 189
KASV LDPQDL TCPYLASDLVHWHNPSTWSNNLVPQPNENITIPAGKRVLISPCSISQT
Sbjct: 239 KASVSLDPQDLSTCPYLASDLVHWHNPSTWSNNLVPQPNENITIPAGKRVLISPCSISQT 298
Query: 190 AIYQRIVIPATSELIFADSNLTMNVKDILVQGKFIMGTTKCRYNANINIIFHGSKTKVDT 369
AIYQRIVIPATSELIFADSNLTMNVKDILVQGKFIMGTTKCRYNANINIIFHGSKTKVDT
Sbjct: 299 AIYQRIVIPATSELIFADSNLTMNVKDILVQGKFIMGTTKCRYNANINIIFHGSKTKVDT 358
Query: 370 IAPFYGSKGIAVSAGGFISVHGKQYHNSWTKLASTVWSGDRIIYVQDNINWEVGQQVLIT 549
IAPFYGSKGIAVSAGGFISVHGKQYHNSWTKLASTVWSGDRIIYVQDNINWEVGQQVLIT
Sbjct: 359 IAPFYGSKGIAVSAGGFISVHGKQYHNSWTKLASTVWSGDRIIYVQDNINWEVGQQVLIT 418
Query: 550 TSQFKDEIDNQNEVLTIKSILGKAIEFTTP 639
TSQFKDEIDNQNEVLTIKSILGKAIEFTTP
Sbjct: 419 TSQFKDEIDNQNEVLTIKSILGKAIEFTTP 448
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 3,991,691,913
Number of extensions: 87467566
Number of successful extensions: 242007
Number of sequences better than 10.0: 40
Number of HSP's gapped: 241904
Number of HSP's successfully gapped: 58
Length of query: 461
Length of database: 1,732,582,204
Length adjustment: 135
Effective length of query: 326
Effective length of database: 1,010,438,449
Effective search space: 329402934374
Effective search space used: 329402934374
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Dictyostelium discoideum cDNA Project Home