Homology VHM318 vs Protein
Query= VHM318 (VHM318Q) /CSM/VH/VHM3-A/VHM318Q.Seq.d/
(538 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC114265_2(AC114265|pid:none) Dictyostelium discoideum chromosom... 192 9e-65
CU928167_310(CU928167|pid:none) Kluyveromyces thermotolerans str... 62 2e-08
AM452165_1(AM452165|pid:none) Vitis vinifera contig VV78X185891.... 58 2e-07
AK369516_1(AK369516|pid:none) Hordeum vulgare subsp. vulgare mRN... 56 1e-06
(Q5RCC2) RecName: Full=Pre-mRNA-processing factor 6; AltName: Fu... 55 2e-06
AK145461_1(AK145461|pid:none) Mus musculus 1 cell embryo 1 cell ... 55 2e-06
CQ834640_1(CQ834640|pid:none) Sequence 511 from Patent WO2004058... 55 2e-06
AK001554_1(AK001554|pid:none) Homo sapiens cDNA FLJ10692 fis, cl... 55 2e-06
AX885267_1(AX885267|pid:none) Sequence 1130 from Patent EP1033401. 55 2e-06
(Q9NTE6) RecName: Full=Pre-mRNA-processing factor 6; AltName: Fu... 55 2e-06
(A1A5S1) RecName: Full=Pre-mRNA-processing factor 6; AltName: Fu... 55 2e-06
AC079888_1(AC079888|pid:none) Oryza sativa chromosome 10 BAC OSJ... 54 3e-06
AE014296_3467(AE014296|pid:none) Drosophila melanogaster chromos... 54 3e-06
AC068923_2(AC068923|pid:none) Oryza sativa chromosome 10 BAC OSJ... 54 3e-06
BC091611_1(BC091611|pid:none) Xenopus tropicalis MGC97740 protei... 54 5e-06
BC079686_1(BC079686|pid:none) Xenopus laevis MGC80263 protein, m... 54 5e-06
(Q2KJJ0) RecName: Full=Pre-mRNA-processing factor 6; AltName: Fu... 53 9e-06
AC144617_5(AC144617|pid:none) Medicago truncatula clone mth2-7m9... 52 1e-05
AP008207_927(AP008207|pid:none) Oryza sativa (japonica cultivar-... 52 1e-05
AF071527_14(AF071527|pid:none) Arabidopsis thaliana BAC F9H3, fr... 52 2e-05
AK226702_1(AK226702|pid:none) Arabidopsis thaliana mRNA for puta... 52 2e-05
AF026031_1(AF026031|pid:none) Homo sapiens putative mitochondria... 52 2e-05
AM920437_805(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 52 2e-05
BC066556_1(BC066556|pid:none) Danio rerio c20orf14 homolog (H. s... 51 3e-05
FQ311442_164(FQ311442|pid:none) Sporisorium reilianum SRZ2 chrom... 51 3e-05
HE605206_167(HE605206|pid:none) Candida parapsilosis strain CDC3... 50 4e-05
(Q12381) RecName: Full=Pre-mRNA-splicing factor prp1; &AL021838... 50 6e-05
FN357570_4(FN357570|pid:none) Schistosoma mansoni genome sequenc... 49 1e-04
CP002687_5140(CP002687|pid:none) Arabidopsis thaliana chromosome... 49 1e-04
CP002687_5141(CP002687|pid:none) Arabidopsis thaliana chromosome... 49 1e-04
CR380954_435(CR380954|pid:none) Candida glabrata strain CBS138 c... 49 2e-04
GN099348_1(GN099348|pid:none) Sequence 4129 from Patent WO200903... 49 2e-04
FQ857265_9(FQ857265|pid:none) Piriformospora indica PIRI_contig_... 48 3e-04
CP000287_78(CP000287|pid:none) Cryptococcus gattii WM276 chromos... 47 4e-04
FQ790255_95(FQ790255|pid:none) Botryotinia fuckeliana isolate T4... 47 4e-04
CU928173_120(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 47 4e-04
AE017341_76(AE017341|pid:none) Cryptococcus neoformans var. neof... 47 4e-04
GN099344_1(GN099344|pid:none) Sequence 4125 from Patent WO200903... 47 4e-04
AP007154_646(AP007154|pid:none) Aspergillus oryzae RIB40 DNA, SC... 47 4e-04
BX294012_44(BX294012|pid:none) Neurospora crassa DNA linkage gro... 47 5e-04
CR382126_182(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 47 6e-04
CU640366_69(CU640366|pid:none) Podospora anserina S mat+ genomic... 46 0.001
AE016815_112(AE016815|pid:none) Ashbya gossypii ATCC 10895 chrom... 46 0.001
HE576752_1033(HE576752|pid:none) Naumovozyma castellii CBS 4309 ... 45 0.002
FR824046_187(FR824046|pid:none) Albugo laibachii Nc14, genomic c... 44 0.003
CP000600_295(CP000600|pid:none) Ostreococcus lucimarinus CCE9901... 42 0.012
FN393060_162(FN393060|pid:none) Saccharomyces cerevisiae EC1118 ... 42 0.012
HE612868_92(HE612868|pid:none) Tetrapisispora phaffii CBS 4417 c... 42 0.020
AK368084_1(AK368084|pid:none) Hordeum vulgare subsp. vulgare mRN... 42 0.020
CP001331_35(CP001331|pid:none) Micromonas sp. RCC299 chromosome ... 41 0.034
CP002501_105(CP002501|pid:none) Eremothecium cymbalariae DBVPG#7... 40 0.044
AK317564_1(AK317564|pid:none) Arabidopsis thaliana AT1G80790 mRN... 37 0.65
AC011713_15(AC011713|pid:none) Arabidopsis thaliana chromosome 1... 37 0.65
AE014186_88(AE014186|pid:none) Plasmodium falciparum 3D7 chromos... 35 1.9
CP000591_161(CP000591|pid:none) Ostreococcus lucimarinus CCE9901... 34 3.2
FR746099_507(FR746099|pid:none) Haloquadratum walsbyi C23, compl... 33 7.1
FO080545_4(FO080545|pid:none) Caenorhabditis elegans Cosmid W05H... 33 9.4
AB185280_1(AB185280|pid:none) Oryza sativa Japonica Group OsOBF1... 33 9.4
>AC114265_2(AC114265|pid:none) Dictyostelium discoideum chromosome 2
map 4520461-4544940 strain AX4, complete sequence.
Length = 1014
Score = 192 bits (487), Expect(2) = 9e-65
Identities = 98/128 (76%), Positives = 99/128 (77%)
Frame = +3
Query: 42 MAHILQKDKRFFLYQEPPPGYIAGFGRGAVGFTTRLDIGTARNSDIPGFPGRDDKSKLTS 221
MAHILQKDKRFFLYQEPPPGYIAGFGRGAVGFTTRLDIGTARNSDIPGFPGRDDKSKLTS
Sbjct: 1 MAHILQKDKRFFLYQEPPPGYIAGFGRGAVGFTTRLDIGTARNSDIPGFPGRDDKSKLTS 60
Query: 222 NTGGEDEDEDEQSNKXXXXXXXXXXXXXXXSSTDKLFDSNKGYDQEXXXXXXXXXXXXSK 401
NTGGEDEDEDEQSNK SSTDKLFDSNKGYDQE SK
Sbjct: 61 NTGGEDEDEDEQSNKGGGGGDNGRFDEFEGSSTDKLFDSNKGYDQEDKDADAIWDAIDSK 120
Query: 402 MDSP*KKE 425
MDS KK+
Sbjct: 121 MDSRRKKK 128
Score = 78.6 bits (192), Expect(2) = 9e-65
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +1
Query: 412 RRKKKREANEQLKIEKQRESRPKIQQHLQDLKQDLATVS 528
RRKKKREANEQLKIEKQRESRPKIQQHLQDLKQDLATVS
Sbjct: 124 RRKKKREANEQLKIEKQRESRPKIQQHLQDLKQDLATVS 162
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 1,057,591,723
Number of extensions: 19328732
Number of successful extensions: 67236
Number of sequences better than 10.0: 58
Number of HSP's gapped: 66940
Number of HSP's successfully gapped: 93
Length of query: 179
Length of database: 1,732,582,204
Length adjustment: 123
Effective length of query: 56
Effective length of database: 1,074,629,005
Effective search space: 60179224280
Effective search space used: 60179224280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
Dictyostelium discoideum cDNA Project Home