Homology VHK396 vs Protein

Query= VHK396 (VHK396Q) /CSM/VH/VHK3-D/VHK396Q.Seq.d/
         (1297 letters)

Database: nrp_B
           5,349,213 sequences; 1,732,582,204 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77931_1(U77931|pid:none) Rattus norvegicus rRNA promoter bindin...    64   1e-08
GU474914_23(GU474914|pid:none) Uncultured delta proteobacterium ...    48   0.001
AY914947_1(AY914947|pid:none) Schistosoma japonicum SJCHGC01393 ...    42   0.077
FN364233_1(FN364233|pid:none) Schistosoma mansoni genome sequenc...    42   0.10
FN359963_1(FN359963|pid:none) Schistosoma mansoni genome sequenc...    42   0.10
HE601628_128(HE601628|pid:none) Schistosoma mansoni strain Puert...    42   0.10
BT065827_1(BT065827|pid:none) Zea mays full-length cDNA clone ZM...    41   0.13
AM085146_10(AM085146|pid:none) Magnetospirillum gryphiswaldense ...    30   0.76
(Q6CQE5) RecName: Full=Protein TAR1;  &CR382124_729(CR382124|pid...    39   0.85
EU955062_1(EU955062|pid:none) Zea mays clone 1505874 hypothetica...    38   1.1
AE010299_1578(AE010299|pid:none) Methanosarcina acetivorans str....    38   1.5
CP000930_2260(CP000930|pid:none) Heliobacterium modesticaldum Ic...    37   3.2
GU474883_37(GU474883|pid:none) Uncultured delta proteobacterium ...    35   9.4
GU474879_27(GU474879|pid:none) Uncultured delta proteobacterium ...    35   9.4
GU474881_38(GU474881|pid:none) Uncultured Acidobacteriales bacte...    35   9.4

>U77931_1(U77931|pid:none) Rattus norvegicus rRNA promoter binding
            protein mRNA, complete cds.
          Length = 295

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 51/140 (36%), Positives = 65/140 (46%)
 Frame = -3

Query: 1193 QPLEPILIPKLQIGFADFPYLH*YI*PEAIHLGDLMWLLVRTPNRIKYHNPVFKDHLADA 1014
            QPLEPILIPKL+I  ADFPYLH    PEA+HLGDL+ + VR   R     P F+
Sbjct: 154  QPLEPILIPKLRIRLADFPYLHCSNMPEAVHLGDLLRIWVRPGARFTPSPPDFQGPARAH 213

Query: 1013 RPNPKDCALPLCDESSSPVDLIRRTPRQC*QEKITLPRPPIDVPDYDRLP*YPIRWCRNF 834
            R  P+    P     S    +  R      +EK TLP  P       R+         +
Sbjct: 214  RTPPEPRRFPRHGPLSRGEPIPGRPALH--KEKRTLPGAPAGFSGIGRVT------ALDA 265

Query: 833  NPLPFRPIKSLVLKPPSLSI 774
            +  P  P++    +P SLSI
Sbjct: 266  SRRPSPPLRIRRSEPDSLSI 285

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 4,000,048,921
Number of extensions: 88791925
Number of successful extensions: 161768
Number of sequences better than 10.0: 15
Number of HSP's gapped: 161748
Number of HSP's successfully gapped: 16
Length of query: 432
Length of database: 1,732,582,204
Length adjustment: 135
Effective length of query: 297
Effective length of database: 1,010,438,449
Effective search space: 300100219353
Effective search space used: 300100219353
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)