Dictyostelium discoideum cDNA Clone VHK396

Sequence VHK396

GTGCTGAAAG CTATTAGAAA GGATCAATTG TGTTGATTCG ACCTATCTCT
AATATGTTAG TCGGGTATGT CCGGCAGTTT AGCGGCAGGG GGAACGGTGT
ACGCGCTGGG TTTCTGGCCA CCGTTGCAGT AGCAGGTAAG ATCTGCGTAA
TACTAGTACT TGTCCGAAAG ATTATTCTAA TTCCGCCTCA CCTTTGTAAG
ATTACCCGCT GAACTTAAGC ATATCAGTAA GCGGAGGAAA AGAAACTAAC
TAGGATTCCG TCAGTAACGG CGAGTGAAGA CGGAATAGCC CAAGGTTCAA
ACCTGGATCT CTTCGAGGTT AGGTGATGTG ACCTATGGAC TGATGGAGCC
CGCTGTTGTG ACTGCTAATT CCGTTTGGAA TTTCGAGTCG TAGAAGGTGA
TAACCCTGTT CGCAGTATCA CAACAGTTGG ACTTTGCCAT TAGCTCCACG
AGTAGGAATG TCTGAAATTG CATTCTGAAT GGGTGATAAG ATTCATCCAA
GGCTAAATAT ATGTTAGGAG ATCGATAGCA TACAAGTACC GTGAGGGAAA
GGTGAAAAGA ACTTTGAAAA AAGGTTTAAA AGTATTTGAC ACCGTTTATG
TGGAAGCG-- --------CT TTAGTGCAGA TCTTGATGGT AGTAGCAAAT
ATTCAAAAGA ATTTACTTTG AAGGCCGAAG TGGGGAAGGG TTCCATAACA
ATGGAATTCA CTTATGGGTG AGTCGATCCT AAGGTTTGGG TTAACTCTCT
CTAATAAGGT TACTAGGTCA TTGGATCGAA AGTGAAGGTG GCTTTAACAC
TAGTGACTTT ATAGGCCGAA AGGGAAGCGG GTTAAAATTC CTGCACCATC
GAATGGGATA TTAGGGTAAC CGATCGTAAT CCGGGACATC AATTGGCGGT
CGAGGAAGAG TTATCTTTTC TTGTTAACAT TGTCTTGGGG TCCTCCGAAT
CAGGTCAACT GGAGACGAGG ATTCATCGCA CAATGGAAGA GCACAGTCCT
TTGGATTGGG TCTCGCATCC GCTAAATGGT CCTTGAAAAC CGGATTATGG
TATTTAATCC TATTTGGTGT TCGTACCAAT AACCACATCA GGTCTCCAAG
GTGAATAGCC TCTGGTCAAA TGTATTAATG TAGATAAGGG AAGTCGGCAA
AACCGATCTG TAACTTCGGG ATAAGGATTG GCTCTAAAGG CTGGTGGAGT
GGACATATTG GAGTTTGCTA TTTGTTTTTT ACTTTTAGGA TGGGCAACTG
TTTTGAAGGT TTAAGATGGG TGGTAATTCT TTCCAATGTG AGGGCTT

Translated Amino Acid Sequence VHK396

aesy*kgsivlirpisnmlvgyvrqfsgrgngvragflatvavagkicvilvlvrkiili
pphlckitr*t*ayq*aeekkltripsvtasedgiaqgsnldlfevr*cdlwtdgarccd
c*frlefrvvegdnpvrsittvglch*lhe*eclklhsewvirfiqg*IYVRRSIAYKYR
EGKVKRTLKKGLKVFDTVYVEA---

---FSADLDGSSKYSKEFTLKAEVGKGSITMEFTYG*vdpkvwvnsl**gy*vigskvkv
altlvtl*aereag*nsctiewdirvtdrnpghqlaveeelsflvnivlgssesgqletr
ihrtmeehspldwvshplngp*kpdygi*sylvfvpittsglqge*plvkcinvdkgsrq
nrsvtsg*glalkaggvdilefaicflllgwatvlkv*dgw*ffpm*gl

Homology VHK396 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VHK396 (VHK396Q) /CSM/VH/VHK3-D/VHK396Q.Seq.d/                       2512   0.0
AHL322 (AHL322Q) /CSM/AH/AHL3-A/AHL322Q.Seq.d/                       1261   0.0
SHI601 (SHI601Q) /CSM/SH/SHI6-A/SHI601Q.Seq.d/                       1225   0.0
VHO517 (VHO517Q) /CSM/VH/VHO5-A/VHO517Q.Seq.d/                       1223   0.0
VHH863 (VHH863Q) /CSM/VH/VHH8-C/VHH863Q.Seq.d/                       1223   0.0
CHS113 (CHS113Q) /CSM/CH/CHS1-A/CHS113Q.Seq.d/                       1207   0.0
VHQ207 (VHQ207Q) /CSM/VH/VHQ2-A/VHQ207Q.Seq.d/                       1197   0.0
VHL535 (VHL535Q) /CSM/VH/VHL5-B/VHL535Q.Seq.d/                       1197   0.0
VHG170 (VHG170Q) /CSM/VH/VHG1-C/VHG170Q.Seq.d/                       1168   0.0
VFN416 (VFN416Q) /CSM/VF/VFN4-A/VFN416Q.Seq.d/                       1168   0.0

Homology VHK396 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1346   0.0    1
(BJ443122) Dictyostelium discoideum cDNA clone:ddv51p23, 3' ...  1346   0.0    1
(BJ336223) Dictyostelium discoideum cDNA clone:dda53l05, 5' ...  1261   0.0    1
(BJ395997) Dictyostelium discoideum cDNA clone:dds41a02, 5' ...  1225   0.0    1
(BJ426713) Dictyostelium discoideum cDNA clone:ddv60a05, 5' ...  1223   0.0    1
(BJ422673) Dictyostelium discoideum cDNA clone:ddv46n16, 5' ...  1223   0.0    1
(DQ340385) Dictyostelium citrinum 17S ribosomal RNA, 5.8S ri...  1215   0.0    1
(BJ371460) Dictyostelium discoideum cDNA clone:ddc58i03, 5' ...  1207   0.0    1
(BJ424289) Dictyostelium discoideum cDNA clone:ddv51p23, 5' ...  1203   0.0    1
(BJ427662) Dictyostelium discoideum cDNA clone:ddv63m02, 5' ...  1197   0.0    1

Homology VHK396 vs Protein

Sequences producing significant alignments:                      (bits) Value


U77931_1(U77931|pid:none) Rattus norvegicus rRNA promoter bindin...    64   1e-08
GU474914_23(GU474914|pid:none) Uncultured delta proteobacterium ...    48   0.001
AY914947_1(AY914947|pid:none) Schistosoma japonicum SJCHGC01393 ...    42   0.074
FN364233_1(FN364233|pid:none) Schistosoma mansoni genome sequenc...    42   0.096
FN359963_1(FN359963|pid:none) Schistosoma mansoni genome sequenc...    42   0.096
BT065827_1(BT065827|pid:none) Zea mays full-length cDNA clone ZM...    41   0.13
AM085146_10(AM085146|pid:none) Magnetospirillum gryphiswaldense ...    30   0.73
(Q6CQE5) RecName: Full=Protein TAR1;  &CR382124_729(CR382124|pid...    39   0.82
EU955062_1(EU955062|pid:none) Zea mays clone 1505874 hypothetica...    38   1.1
AE010299_1578(AE010299|pid:none) Methanosarcina acetivorans str....    38   1.4

Homology VHK396 vs Genome