Dictyostelium discoideum cDNA Clone VHK350

Sequence VHK350

CAATATTTAA GTGAAGTTTT AACATTTACA AATAAATTAA TTGAAAAATC
AATTACTACA AGAAATTGGA ATGAAATGGA AGATATTTCA AATATAATTT
ATAAATTTTG TAATACTTAT AAATTTAGTG GTATTGCATG TTTACCAAAT
CAGATTGTTA TACCATTCCT TCAATATACG ACACAATTTG TATTGTCATC
GTTGAATTTA ATGAAAATTT GGGCAAAACA TGGTGAAGAG GAATTGGAGG
AAGAGTTTGA AAATGATTGT TTCGATATTT TATTACGTTC ATTCGTTTCA
TTGATATCCG ATGCAGAGAT GTTAATTAAT CGTAAGAGGG TTGACCAATT
GGAAAACTTT AAAGAACAAT ATCAAGTACT CAAACAATGT ACTTCCCAAA
TCTACCAAAA CTACATTCAA TCAAGATTGG AACTATCAGA AATTGAAATT
AATAAATCCA ATGAAGAGTT AGAACCAACC TGTAAAAGTA GAGGTGGTAT
TGGTGGTGCT GAAGATGAGA TTGATGAAGA TAAAAAGAAA TATGATGAAC
AATTACGTTC AGTTGCATAT ATTGGTAGAT TAAATCCTGG TCAATCATT-
---------A AAACTTTAGA TTCAAAAGAA TATTATCATA GAGTTAGAAT
GATGGTTAAA ATTTTAACAA ATATTATTAC ATTTGGTGAT CAAAGAAATA
ATTGTCCAAC TATTATTTCT GAAACAATTT TTCATGCTAT AAATATAATT
ACACCATGTT TATCAAATAA TGATTTATTA TTATATCCAA AATTAGCAAG
AAATTATTTT ATGATTACAT CATTTTTATT TGGTGCAGAT AATATTCAAG
TAAAGAATAT ACCAGTAATT AATACAATTT ATTCATTAAT TGAAGCTGGT
ATACTTCATC ATGATTTAGA GATTGTTAAA TCATGTTTTG AATGTATTGG
TTGTTTAACT AAAAGTTTAG AGAATAGTAA AGAGAAATCT GGTGGATTAG
TCGATCCTCA TTATCAAAGT GTACTCATTC AATTCATTGG TTCAGTTATT
AATTTCTTAT TACTTCAAGA TTTTAATGTC GATGAATTAT TATCAGTTGC
TTCTGAAACT TTATTCTCTT TAATGTATTC TTCACCAGAT GGTTATAGAT
CAAAAGTAAT TGAATTAATC ACTCGTCAAG ATCCATCAAT TCAATCAAGA
GTAGTACAAC AATTTGAAAC TCTTACTATA ATTGGTACTG ATAGAAAATC
AAAAGATTTA TTTATGAAAA ATTTACAAAA TTTCTTAGTA AATGTAAAAT
CATNATAATA AAAA

Translated Amino Acid Sequence VHK350

QYLSEVLTFTNKLIEKSITTRNWNEMEDISNIIYKFCNTYKFSGIACLPNQIVIPFLQYT
TQFVLSSLNLMKIWAKHGEEELEEEFENDCFDILLRSFVSLISDAEMLINRKRVDQLENF
KEQYQVLKQCTSQIYQNYIQSRLELSEIEINKSNEELEPTCKSRGGIGGAEDEIDEDKKK
YDEQLRSVAYIGRLNPGQS---

---KTLDSKEYYHRVRMMVKILTNIITFGDQRNNCPTIISETIFHAINIITPCLSNNDLL
LYPKLARNYFMITSFLFGADNIQVKNIPVINTIYSLIEAGILHHDLEIVKSCFECIGCLT
KSLENSKEKSGGLVDPHYQSVLIQFIGSVINFLLLQDFNVDELLSVASETLFSLMYSSPD
GYRSKVIELITRQDPSIQSRVVQQFETLTIIGTDRKSKDLFMKNLQNFLVNVKSX**k

Homology VHK350 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VHK350 (VHK350Q) /CSM/VH/VHK3-C/VHK350Q.Seq.d/                       2539   0.0
VHO153 (VHO153Q) /CSM/VH/VHO1-C/VHO153Q.Seq.d/                        910   0.0
AHM211 (AHM211Q) /CSM/AH/AHM2-A/AHM211Q.Seq.d/                         44   0.005
VHL171 (VHL171Q) /CSM/VH/VHL1-C/VHL171Q.Seq.d/                         42   0.021
AHF749 (AHF749Q) /CSM/AH/AHF7-C/AHF749Q.Seq.d/                         42   0.021
VSK440 (VSK440Q) /CSM/VS/VSK4-B/VSK440Q.Seq.d/                         40   0.084
VSF710 (VSF710Q) /CSM/VS/VSF7-A/VSF710Q.Seq.d/                         40   0.084
VSF337 (VSF337Q) /CSM/VS/VSF3-B/VSF337Q.Seq.d/                         40   0.084
VFJ651 (VFJ651Q) /CSM/VF/VFJ6-C/VFJ651Q.Seq.d/                         40   0.084
VFG729 (VFG729Q) /CSM/VF/VFG7-B/VFG729Q.Seq.d/                         40   0.084

Homology VHK350 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ424145) Dictyostelium discoideum cDNA clone:ddv51d13, 5' ...  1187   0.0    1
(BJ442977) Dictyostelium discoideum cDNA clone:ddv51d13, 3' ...   952   0.0    2
(BJ445485) Dictyostelium discoideum cDNA clone:ddv59i13, 3' ...   793   0.0    1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    34   0.004  19
(CP000361) Arcobacter butzleri RM4018, complete genome.            48   0.005  20
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    50   0.022  18
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g...    40   0.025  22
(AE017308) Mycoplasma mobile 163K complete genome.                 34   0.032  22
(AJ010592) Guillardia theta DNA for complete sequence of nuc...    40   0.035  10
(EI287573) GM_WBc0007N13.f GM_WBc Glycine max genomic clone ...    52   0.054  1

Homology VHK350 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54UP5) RecName: Full=Exportin-4;          Short=Exp4;               457   e-127
CP002686_495(CP002686|pid:none) Arabidopsis thaliana chromosome ...    92   9e-17
AP008216_847(AP008216|pid:none) Oryza sativa (japonica cultivar-...    86   5e-15
(Q499Y0) RecName: Full=Exportin-4;  &BC099668_1(BC099668|pid:none)     79   6e-13
AB051508_1(AB051508|pid:none) Homo sapiens mRNA for KIAA1721 pro...    75   6e-12
AK023108_1(AK023108|pid:none) Homo sapiens cDNA FLJ13046 fis, cl...    75   6e-12
BC113571_1(BC113571|pid:none) Homo sapiens exportin 4, mRNA (cDN...    75   6e-12
(Q9ESJ0) RecName: Full=Exportin-4;          Short=Exp4;                73   3e-11
AK129430_1(AK129430|pid:none) Mus musculus mRNA for mKIAA1721 pr...    73   3e-11
AK042783_1(AK042783|pid:none) Mus musculus 7 days neonate cerebe...    73   3e-11

Homology VHK350 vs Genome