Homology VHK313 vs Protein
Query= VHK313 (VHK313Q) /CSM/VH/VHK3-A/VHK313Q.Seq.d/
(1194 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q9U1M8) RecName: Full=Myosin-I heavy chain; AltName: Full=Class... 162 5e-38
AC116957_47(AC116957|pid:none) Dictyostelium discoideum chromoso... 162 5e-38
>(Q9U1M8) RecName: Full=Myosin-I heavy chain; AltName: Full=Class VII
unconventional myosin; AltName: Full=DdMVII;
Short=DdM7; &A59249(A59249) &L35321_1(L35321|pid:none)
Length = 2357
Score = 162 bits (409), Expect = 5e-38
Identities = 90/144 (62%), Positives = 90/144 (62%)
Frame = +2
Query: 2 KISITDLLQGLKQTVRSVTKFEVDESKFELPPGIENVLKRAPGIKRQASSFLPGQPIPDV 181
KISITDLLQGLKQTVRSVTKFEVDESKFELPPGIENVLKRAPGIKRQASSFLPGQPIPDV
Sbjct: 927 KISITDLLQGLKQTVRSVTKFEVDESKFELPPGIENVLKRAPGIKRQASSFLPGQPIPDV 986
Query: 182 YSSPQYPVDEAXXXXXXXXXXXXXXXXLPLPTXXXXXXXXXXXXXXXXXXXXXXXXXXXX 361
YSSPQYPVDEA LPLPT
Sbjct: 987 YSSPQYPVDEADDDDSNNNYINSNNGDLPLPTSQSSDFSLPPPPSSSSMDFGLPPPPPSS 1046
Query: 362 XXXXXXXXXXMPVFDFGMIDPILG 433
MPVFDFGMIDPILG
Sbjct: 1047 SSGGTYSLPPMPVFDFGMIDPILG 1070
Score = 76.3 bits (186), Expect = 3e-12
Identities = 41/56 (73%), Positives = 41/56 (73%)
Frame = +2
Query: 1010 FRSSLRVSMLNTXXXXXXXXXXXXXKRLTVSPAIGTDSQXAXWASTRFRSFKRAST 1177
FRSSLRVSMLNT KRLTVSPAIGTDSQ A WASTRFRSFKRAST
Sbjct: 1817 FRSSLRVSMLNTSNDGGDNSSDDPSKRLTVSPAIGTDSQLAQWASTRFRSFKRAST 1872
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 1,582,170,963
Number of extensions: 19927995
Number of successful extensions: 45846
Number of sequences better than 10.0: 2
Number of HSP's gapped: 45762
Number of HSP's successfully gapped: 4
Length of query: 398
Length of database: 1,732,582,204
Length adjustment: 134
Effective length of query: 264
Effective length of database: 1,015,787,662
Effective search space: 268167942768
Effective search space used: 268167942768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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